Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC CP000730 1,747,382 (TAC)3→2 100% coding (2065‑2067/2280 nt) secDF ← RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP000730 1747374 1747376 3 37 [0] [1] 38 secDF RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1747377 =0 (0.000)37 (0.860) 30/242 NT 100% coding (2072/2280 nt) secDF RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter
?CP000730 = 1747373 0 (0.000)coding (2076/2280 nt) secDF RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter

GTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACC  >  CP000730/1747249‑1747484
                                                                                                                            |                                                                                                               
gTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataact                                                                                                  <  1:531710‑M2/140‑16 (MQ=255)
 ttttttTATTATTTTCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATACTGCTAAAGTAAAGTTGAATATCGTAGGAGCCTCGAAGAATAGTATAGCAcctactaccataactg                                                                                                 <  2:190232‑M2/140‑17 (MQ=255)
  tttttCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGATCACCGAAGAATAGTATAGCAactactacaataactgt                                                                                                >  2:94164‑M2/1‑123 (MQ=255)
   ttttCATTTTTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgtt                                                                                               >  2:439595‑M2/1‑122 (MQ=255)
     ttCATTTTTCCCCTTAGTTGAACGACAATGAAGATTGAATATATTACACAAGAAATAAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaa                                                                                             >  1:56190‑M2/1‑120 (MQ=255)
      ttattattccCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaat                                                                                            >  2:296075‑M2/3‑119 (MQ=255)
      tCCTTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaat                                                                                            >  2:458067‑M2/1‑119 (MQ=255)
      tCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATGCACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTAAAGCAactactacaataactgtcaat                                                                                            <  2:294701‑M2/140‑22 (MQ=255)
       cATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaata                                                                                           <  2:157407‑M2/140‑23 (MQ=255)
        attcttCCCCAGAGCTGAACGGCAATGAAGATTTAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGAAGCACCGAAGAATAGTATAGCAactactacaataactgttaatac                                                                                          >  2:446656‑M2/1‑117 (MQ=255)
         ttattCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatact                                                                                         <  1:236198‑M2/140‑25 (MQ=255)
            ttCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgta                                                                                      >  2:158501‑M2/1‑113 (MQ=255)
                   tAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAGATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattg                                                                               >  2:280459‑M2/1‑106 (MQ=255)
                       ggAACGGCAATGAAGATTGCAATGACTGCTCCAAAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacg                                                                           <  1:404809‑M2/140‑39 (MQ=255)
                       ggAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacg                                                                           <  1:518785‑M2/140‑39 (MQ=255)
                            tgcAATGAAGATTTAAGAGAATAAACTAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtca                                                                      >  1:324794‑M2/2‑97 (MQ=255)
                            ggCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtca                                                                      >  2:455652‑M2/1‑97 (MQ=255)
                             gCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtagtaattgaacgggtcat                                                                     <  2:295007‑M2/140‑45 (MQ=255)
                                           agagAATACACCAGAAATCAATCCGGTAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCAAAGAATAGTATAGAAactactacaataactattaatactgtattaattgaacgtttcattgtctgtcaaattg                                                       <  1:421792‑M2/140‑59 (MQ=255)
                                                 tACACCAGAAATCAATCAGATAAATAATGCTAAAATAAAGTAAAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctat                                                 >  1:101276‑M2/1‑76 (MQ=255)
                                                  acacCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtataattgatctatt                                                <  2:343074‑M2/140‑66 (MQ=255)
                                                  acaaaagaaatCAATCCGATAAATAATGCTAAAGTAAAGTCGAATCTCGTAGGAGCACCGCAGAATAGTATAGCAactactccaataactgttaatactgtattaattaaaggtgtaatgggctgtatacttgatctatt                                                <  2:509504‑M2/135‑66 (MQ=255)
                                                   cacCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctatta                                               <  1:171456‑M2/140‑67 (MQ=255)
                                                         aaaTCAATCCGATAAATAATGCTAAAGTAAAGTGGAATATCGTAGGGGCACGGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgaaatattagcgtaa                                         <  2:179080‑M2/140‑73 (MQ=255)
                                                               atcCGATAAAAAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaatacctgttaacattgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatca                                   >  2:153214‑M2/1‑62 (MQ=255)
                                                                            tGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttg                      <  1:431287‑M2/140‑92 (MQ=255)
                                                                             gCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgt                     >  2:236198‑M2/1‑48 (MQ=255)
                                                                                  aggaaagtTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaa                >  1:374786‑M2/1‑43 (MQ=255)
                                                                                      aagtTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcactttgttctgttttcgtaatcac            <  2:205024‑M2/140‑102 (MQ=255)
                                                                                      aagtTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatataatcaatttgttctgttgtcgtaatcac            <  2:530633‑M2/140‑102 (MQ=255)
                                                                                      aagtTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtacaattgatcgattaacgatatcatcaatttgttctgttgtcgtaatcac            >  2:2773‑M2/1‑39 (MQ=255)
                                                                                       atttgaATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaccgctatcatcaatttgttgtgtgggcgtaatcact           >  2:335108‑M2/3‑38 (MQ=255)
                                                                                       atttgaATATCGAAGGTGAACCTATGTATGTTATGGCAactactacaatatctgttaatactgtattaattgaatgtgtcattgtctgtctaattgatctattaactatatcatcaatttgttctgttgtcgtaatcact           >  2:131880‑M2/3‑38 (MQ=255)
                                                                                            aaTATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcacattggcttgttattgtaatcaccttacc      <  1:99146‑M2/140‑108 (MQ=255)
                                                                                               atCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaatcactttaacctt   >  2:293677‑M2/1‑30 (MQ=255)
                                                                                               atCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaatcactttaacctt   >  2:536129‑M2/1‑30 (MQ=255)
                                                                                                tCGTAGGTGCACCGAAGAATAGGATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaaccatagcatcaatttgttctgttgtcgtaatcactttaaccttt  >  2:2742‑M2/1‑29 (MQ=255)
                                                                                                                            |                                                                                                               
GTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACC  >  CP000730/1747249‑1747484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑