New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	514600 =	NA (NA)	3 (0.050)	3/246	NT	NA	intergenic (+268/‑106)	rrs1/rrl1	16S ribosomal RNA/23S ribosomal RNA
	?	CP000730	514618 =	NA (NA)					intergenic (+286/‑88)	rrs1/rrl1	16S ribosomal RNA/23S ribosomal RNA

ATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATG  >  CP000730/514460‑514733                                                                                                                                             |                                                                                                                                      aTAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAGGCTTGAATTCATAAGAAATAATCGCTa                                                                                                                                       >  1:17271/1‑141 (MQ=37)  tAAAGCAGTATGCGGGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAg                                                                                                                                      <  2:668937/141‑1 (MQ=25)  tAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAGATCTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAg                                                                                                                                      <  1:624129/141‑1 (MQ=25)  tAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAg                                                                                                                                      >  2:803089/1‑141 (MQ=35)  tAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATAGCAAg                                                                                                                                      >  2:546968/1‑141 (MQ=25)   aaaGCAGTCTGCTAGCGCTTGACTAAAAAGAAATTGTCCATTGAAAACTAGATAAGTAAGTAAATTATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAgt                                                                                                                                     <  1:97840/141‑1 (MQ=255)     aGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGTATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAgtgt                                                                                                                                   <  1:69415/141‑1 (MQ=18)     aGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAgtgt                                                                                                                                   <  1:256217/141‑1 (MQ=33)     aGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAgtgt                                                                                                                                   >  2:360646/1‑141 (MQ=33)      gCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGtt                                                                                                                                  >  2:650026/1‑141 (MQ=32)      gCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGtt                                                                                                                                  >  2:755047/1‑141 (MQ=32)        aGTATGCGAGCGCGTGACTAAAAAGAAATTGTACGGTGAAAACTAGATAAGTCAGATGAACAAAGATTGTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCg                                                                                                                                >  2:775693/1‑141 (MQ=11)         gTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGa                                                                                                                               <  1:80847/141‑1 (MQ=11)         gTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGa                                                                                                                               <  1:230330/141‑1 (MQ=11)            tgagagaGCTTAACTAAAAAGAAATTGTACAATGAAAACTAGATAAGTAAGTAAAATATAGCTTTTACCAAGCAAAACCGAGTGAAGAATGAGTTTTAAATAAGACTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAg                                                                                                                            <  2:388748/138‑1 (MQ=1)                    ctggACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTca                                                                                                                    <  1:538386/138‑1 (MQ=1)                       gaatAAAAAAAACTTGTACATTGAAAACTAGATAAGTCAGTAAAAGATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACaa                                                                                                                 <  2:411088/138‑1 (MQ=1)                                gagaTTGTACATTGAAAACTAGATAAGTAAGTAAGATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCGTACGCACAAAAGGTTAGTGTTCGAAAGAACACTCACAACATtaataa                                                                                                        >  2:567798/4‑141 (MQ=1)                                                                                                                                      aagcGCTAGTGTTCGTAAGAACGCTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATTTTAACGTTTTACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATg  <  2:422930/138‑1 (MQ=1)                                                                                                                                      aagcGCTAGGGTTCGAAAGGACACTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATg  <  2:650976/138‑1 (MQ=0)                                                                                                                                             |                                                                                                                                      ATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATG  >  CP000730/514460‑514733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.