New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1766474 =48 (0.870)4 (0.080) 3/240 NT 8.9% coding (379/561 nt) tag 3‑methyladenine glycosidase
?CP000730 1766523 = 37 (0.720)coding (428/561 nt) tag 3‑methyladenine glycosidase

TGTGCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1766619‑1766474
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atactgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGC  >  CP000730/1766523‑1766661
                                                                                                                                                                                                                                                                                             
TGTGCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATA                                                                                                                                                   >  1:273160/1‑140
   GCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTG                                                                                                                                                >  1:474988/1‑140
   GCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTG                                                                                                                                                >  2:1278/1‑140
    CATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGC                                                                                                                                               <  2:149973/140‑1
    CATCATATAAACCGGCTGCTGCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGC                                                                                                                                               <  2:150232/140‑1
     ATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTACACCCCTATTGGTTTAAATCTTTAGATAGTTGTGTTACAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCA                                                                                                                                              >  1:56842/1‑140
     ATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAATCCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCA                                                                                                                                              <  1:410175/140‑1
      TCATATTAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCTTATTTTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA                                                                                                                                             <  1:42439/140‑1
      TCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA                                                                                                                                             <  2:595341/140‑1
       CATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGCCCTAAAAATTTAAACCCGGATTGGTTTAAATCTTTAGATAGGTGTGTTGCAGTATCATCAACTGTGATACGGTCAGAAGCATGTTCATACTGCtaa                                                                                                                                            >  2:198914/1‑137
                                    AATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTATGATGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACG                                                                                                               >  1:212944/1‑140
                                                                  CCGTATTGTTTTAAATCTTTAGAAAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTAT                                                                                 <  2:212944/140‑1
                                                                                                      GTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTGGTTTTTAGAAGCAGCCGGTTTATATGTTGCAC                                             >  1:259972/1‑140
                                                                                                      GTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCAC                                             >  1:259975/1‑140
                                                                                                                                          TACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATT         <  1:470533/140‑1
                                                                                                                                            CTGCAACCCAACTATCTAAAGCTTTAAAACAATACGGGTTTAAATTTTTAGGCCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAA       <  2:324380/140‑1
                                                                                                                                            CTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAA       <  2:46490/140‑1
                                                                                                                                             TGCAACACAACTATCTAAATATTTAAAACAATGCGGGTTTAGACTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAAT      <  2:118557/140‑1
                                                                                                                                             TGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTGTAGGTCCAGTAACAGTATTTGCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAAT      <  2:519678/140‑1
                                                                                                                                                 ACACAACTTTTTAAAGATTTAAAACAATATGGGTGTAAATTTTTAGGTCCAGTAACAGTCTTTTCGTGTTTAGAAGCAGCCGGTTTATATGATGCACATTTAGAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGC  <  1:293343/140‑1
                                                                                                                                                                                                                                                                                             
TGTGCATCATATAAACCGGCTGCTTCTAAAAACGAAAATACTGTTACTGGACCTAAAAATTTAAACCCGTATTGTTTTAAATCTTTAGATAGTTGTGTTGCAGTATCATCAACTGTGATACGATCAGAAGCATGTTCATACTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1766619‑1766474
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atactgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGC  >  CP000730/1766523‑1766661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.