New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1766474 =48 (0.870)4 (0.080) 3/240 NT 8.9% coding (379/561 nt) tag 3‑methyladenine glycosidase
?CP000730 1766523 = 37 (0.720)coding (428/561 nt) tag 3‑methyladenine glycosidase

ATCAAGCTCAAGGGTATTTAAAAATTGAACAAGCATATGGTAGTTTTAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGCT  >  CP000730/1766385‑1766662
                                                                                                                                          |                                                                                                                                           
aTCAAGCTCAAGGGTATTTAAAAATTGAACAAGCATATGGTAGTTTTAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACCTGCTTCTGATCGTATCACAGTTGATGATACTGCAaca                                                                                                                                            >  1:551283/1‑140 (MQ=255)
  caagtcaaaGGGTATTTAAAAATTGAACAAGCATATGGTAGTTTTAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAAcaca                                                                                                                                          <  1:845/133‑1 (MQ=255)
         catgttATTTAAAAATTAAACAAGAATATGGTTGATTTAGTATATTTGTATGGTAATATGTAAATAGTAAGCATAAACATTTGCAGAAGCAAGATGCTTGGGATCGTATCACAATTGATGATACTGCAACACAACTATCt                                                                                                                                   >  2:280263/6‑140 (MQ=255)
         aaGGGTATTTAAAAATTGAACAAGCATATGGTAGTTTTAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCt                                                                                                                                   <  2:196194/140‑1 (MQ=255)
            ggTTTTTAAAAATTGAACAATCATATGGTAGTTTTAGTAATTTTTTAGGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTaaa                                                                                                                                <  2:118057/140‑1 (MQ=255)
            ggTATTTAAAAATTGAACAAGCATATGGTAGTTTTAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTAAGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTaaa                                                                                                                                <  1:442766/140‑1 (MQ=255)
            ggTATCTAAAAATTGAACAAGCATATGGTAGTTTTAGTAAATGTTTATTGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTaaa                                                                                                                                <  2:249741/140‑1 (MQ=255)
                tttAAAAATTGAACAAGCATATGGTAGTTTTAGTAAATTTTTATGGTCATATGTAAATGGGAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGAtt                                                                                                                            >  2:470533/1‑140 (MQ=255)
                   aaaaaTTGAAAAAGCATATGGTAGTGTTAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGGATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTaa                                                                                                                         <  1:329383/140‑1 (MQ=255)
                     aaaTTGAACAAGCATATGGTAGTTTTAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTAGCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTaaaa                                                                                                                       <  1:188877/140‑1 (MQ=255)
                            aatactgttactggacctaaaaatttaaacccgtattgttttaaatctttagatagttatgatgcagtatcatcaactgtgatacgatcagaagcatgttcatactgcaaCACAACTATCTAAAGATTTAAAACAATACg                                                                                                                >  1:212944‑M2/111‑140 (MQ=255)
                             atactgttactggacctaaaaatttaaacccgtattgttttaaatctttagatagttgtgTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTTTCTAAAGATTTAAAACAATACgg                                                                                                               <  2:212944‑M1/80‑1 (MQ=255)
                              aaGCATATGGTAGTTTTAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACggg                                                                                                              >  1:571024/1‑140 (MQ=255)
                                   tatGGTAGTTTTAGTAAATTTTTATGGTCATATGTATGTTGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTTATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAAAAATACGGGTTTaa                                                                                                         >  1:520417/1‑140 (MQ=255)
                                   tatGGTAGTTTTAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTaa                                                                                                         >  1:121066/1‑140 (MQ=255)
                                   tatGGTAGTTTTAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTaa                                                                                                         >  2:188197/1‑140 (MQ=255)
                                    atGGTAGTTTTAGTAAATTTTTGTAGTAATATGTAAATGGTAACCCTATAGATTTTCTGGATGACCATTCTTCTGATCGTATCTCAGTTCATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTaaa                                                                                                        <  2:297072/140‑1 (MQ=255)
                                      ggTAGTTTTAGTAAATTTTTATGGTCATATGTACATTGTAATCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTGAAAACAATACGGGTTTAAAtt                                                                                                      <  1:344535/140‑1 (MQ=255)
                                        tatttttAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAAtttt                                                                                                    <  2:255397/137‑1 (MQ=255)
                                                 tAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAg                                                                                           >  1:605326/1‑140 (MQ=255)
                                                    aTTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTACAGCTTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTaa                                                                                        >  1:620093/1‑140 (MQ=255)
                                                          ccgtattgttttaaatctttagaaagttgtgttgcagtatcatcaactgtgatacgatcagaagcatgttcatactgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTAt                                                                                  <  2:212944‑M2/60‑1 (MQ=255)
                                                          aTGGTCATATTTAAATGCTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTAt                                                                                  <  2:157952/140‑1 (MQ=255)
                                                          aTGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTAt                                                                                  <  1:595906/140‑1 (MQ=255)
                                                           cgtattgttttaaatctttagatagttgtgTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCATCATAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTAtt                                                                                 >  1:212944‑M1/31‑140 (MQ=255)
                                                             gTCATATGTAAATGGTAAGCCTAAAGGTTGGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTAtttt                                                                               <  2:551283/140‑1 (MQ=255)
                                                               cttatGTAAATGGTAAGCTTAATGATTTGCAGTGTGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCg                                                                             <  1:135932/138‑1 (MQ=255)
                                                                      caaTGGGAAGCGCAAAGATTTGCAGTATGAACCTGCTTCTGATCGTAGCACAGTTGATGATACTGCAACACAACTATCTACAGATTTAAAACAATACTGGTTTAAATTTTTAGGTCCAGTCACAGTATTTTCGTTTTTAg                                                                      <  2:372243/139‑1 (MQ=255)
                                                                      aaaTGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAg                                                                      <  2:55729/140‑1 (MQ=255)
                                                                       aaTGGTCAGTCTAAAGATTTGCAGTATGAACATTTTTCTGATTGTATCATGGTTGATGATACTGCAACACAACTAGCTAAAGATTTAAAATTAAACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGa                                                                     <  1:386228/140‑1 (MQ=255)
                                                                       aaTGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGa                                                                     <  1:550253/140‑1 (MQ=255)
                                                                          ggTAAGTCGAAAGATTTGCACTATGAACATGCTTCTGAGCGTATTACTATTGATTATACAGCAACACATCTATCAAAAGATGTAAAACGATTCGGGTTTAAAGTTTTAGGTCGAGTAACAGTATTTTCGTTTTTAGCaga                                                                  <  2:130207/140‑2 (MQ=255)
                                                                            tAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAagcag                                                                <  1:195543/140‑1 (MQ=255)
                                                                            tAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAagcag                                                                <  1:398749/140‑1 (MQ=255)
                                                                            tAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTGTCGTTTTTAGAagcag                                                                <  1:323428/140‑1 (MQ=255)
                                                                                       aTTTGCAGTATGAACATGGTTCTGATCGTGGCACGGTTGATGTTGCTGCAGCAGAACTAGCTAAAAATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTatat                                                     >  2:659243/1‑140 (MQ=255)
                                                                                       aTTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGGTGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGGCCAGTAACAGTATTTTCGTTTTTAGCAGCAGCCCGTTTctat                                                     >  2:321986/1‑140 (MQ=255)
                                                                                       aTTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCTGGTTTatat                                                     >  1:391411/1‑140 (MQ=255)
                                                                                        ttaGCAGTATGAACATGCTTCTGACCGTATCACAGTTGATGATACTGCAACACACCTATCTAAAGATTTAAACCAATCCGGGTTTAAATTTTTAGGGCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATatg                                                    >  2:198914‑M1/4‑140 (MQ=255)
                                                                                         TTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATatga                                                   <  2:595341‑M1/140‑1 (MQ=255)
                                                                                         TTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAAAAATAAGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTAATatga                                                   <  1:42439‑M1/140‑1 (MQ=255)
                                                                                          TGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGTAACACAACTATCTAAAGATTTAAACCAATAGGGGTGTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATatgat                                                  >  1:56842‑M1/1‑140 (MQ=255)
                                                                                          TGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGATTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATatgat                                                  <  1:410175‑M1/140‑1 (MQ=255)
                                                                                           GCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGCAGCAGCCGGTTTATatgatg                                                 <  2:150232‑M1/140‑1 (MQ=255)
                                                                                           GCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATatgatg                                                 <  2:149973‑M1/140‑1 (MQ=255)
                                                                                            CAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGc                                                >  2:1278‑M1/1‑140 (MQ=255)
                                                                                            CAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGc                                                >  1:474988‑M1/1‑140 (MQ=255)
                                                                                              gtatcatcaactgtgatacgatcagaagcatgttcatactgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTGGTTTTTAGAAGCAGCCGGTTTATATGTTGcac                                              >  1:259972‑M2/45‑140 (MQ=255)
                                                                                              gtatcatcaactgtgatacgatcagaagcatgttcatactgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGcac                                              >  1:259975‑M2/45‑140 (MQ=255)
                                                                                               TATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGcaca                                             >  1:273160‑M1/1‑140 (MQ=255)
                                                                                                       tGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATATTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAg                                     >  1:6301/1‑140 (MQ=255)
                                                                                                              gATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTAATTTTTAGAAGCAGCCGGTTTATATGATGGACATTTACAAGAATGTcc                              >  1:585706/1‑140 (MQ=255)
                                                                                                                tCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCAt                            <  2:152838/140‑1 (MQ=255)
                                                                                                                     tCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAg                       >  1:358421/1‑140 (MQ=255)
                                                                                                                        caGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCt                    <  2:603210/140‑1 (MQ=255)
                                                                                                                              atgatACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACAt              >  1:563000/1‑140 (MQ=255)
                                                                                                                                  tactgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACAtaatt          <  1:470533‑M2/132‑1 (MQ=255)
                                                                                                                                    ctgcaaCCCAACTATCTAAAGCTTTAAAACAATACGGGTTTAAATTTTTAGGCCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACAtaattaa        <  2:324380‑M2/134‑1 (MQ=255)
                                                                                                                                    ctgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACAtaattaa        <  2:46490‑M2/134‑1 (MQ=255)
                                                                                                                                     tgcaaCACAACTATCTAAATATTTAAAACAATGCGGGTTTAGACTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACAtaattaat       <  2:118557‑M2/135‑1 (MQ=255)
                                                                                                                                     tgcaaCACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTGTAGGTCCAGTAACAGTATTTGCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACAtaattaat       <  2:519678‑M2/135‑1 (MQ=255)
                                                                                                                                         aCACAACTTTTTAAAGATTTAAAACAATATGGGTGTAAATTTTTAGGTCCAGTAACAGTCTTTTCGTGTTTAGAAGCAGCCGGTTTATATGATGCACATTTAGAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGc   <  1:293343‑M2/139‑1 (MQ=255)
                                                                                                                                          cacaACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGCt  <  2:358421/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                           
ATCAAGCTCAAGGGTATTTAAAAATTGAACAAGCATATGGTAGTTTTAGTAAATTTTTATGGTCATATGTAAATGGTAAGCCTAAAGATTTGCAGTATGAACATGCTTCTGATCGTATCACAGTTGATGATACTGCAACACAACTATCTAAAGATTTAAAACAATACGGGTTTAAATTTTTAGGTCCAGTAACAGTATTTTCGTTTTTAGAAGCAGCCGGTTTATATGATGCACATTTACAAGATTGTCCATCAAAGCCTAAACATAATTAATTTGCT  >  CP000730/1766385‑1766662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.