New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 512620 =63 (1.140)48 (1.260)
+TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA
30/178 NT 52.6% intergenic (+688/‑173) recR/rrs1 recombination protein RecR/16S ribosomal RNA
?CP000730 1998278 = NA (NA)intergenic (‑6/+5) USA300HOU_t0050/rrf4 tRNA‑Val/5S ribosomal RNA

CTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTAT  >  CP000730/1998139‑1998416
                                                                                                                                           |                                                                                                                                          
cTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTa                                                                                                                                            <  2:36238/140‑1 (MQ=37)
cTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTa                                                                                                                                            >  1:605258/1‑140 (MQ=37)
       cAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTAGAGAAAGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGc                                                                                                                                     >  1:565431/1‑140 (MQ=255)
          gTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTg                                                                                                                                  >  1:202069/1‑140 (MQ=255)
           tCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGAAGATAGTATCCCAGCTGAGCTAATTCTCCGATTTAAAACTTCCTgg                                                                                                                                 >  1:286505/1‑140 (MQ=14)
            cAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCACTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGc                                                                                                                                >  1:145569/1‑140 (MQ=255)
            cAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGCGAACGAACCGCCGACCCACTGCAAGTAAGGCAGATGCCCTCCCAGCTGAACTAATACTCCGATTTAAAACTGCCTGGc                                                                                                                                >  1:305583/1‑140 (MQ=14)
             aGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACAGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCa                                                                                                                               >  1:269492/1‑140 (MQ=255)
              tgtgttctcCCAATGGAGCTAGGCCGACAATATGTAAGAATAAAAGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTAAACGAAGGCGCCGATTTAAAACTGCCTGGCaa                                                                                                                              <  2:305987/135‑1 (MQ=14)
               ttGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGATTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTACGATTTAAAACTGCCTGACAAc                                                                                                                             >  1:60737/1‑140 (MQ=255)
                 gCTCTACCAATTGAGCTCGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGt                                                                                                                           >  2:466170/1‑140 (MQ=255)
                  ctctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACTGGTTCGAACCGCCGACCCACTGCTTGTAAGGCAGATGCTCTCCAAGCTGAGCTAATTCTCTGGTTTAAAATTGCTTTGCAACGtt                                                                                                                          >  1:249581/1‑140 (MQ=14)
                   tctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAAGGGTGGAGAATGACGGGTTCGAACCGCCGCCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTc                                                                                                                         <  2:31943/140‑1 (MQ=255)
                    ctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCt                                                                                                                        <  1:530569/140‑1 (MQ=255)
                      aCCAGTTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCGTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTAc                                                                                                                      <  2:651589/140‑1 (MQ=255)
                        ccagtcaGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGACCCGTCGACCTTCTGCTTGTAAGGTAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTActc                                                                                                                    <  1:17716/134‑1 (MQ=17)
                         aaTTGAGCTAGGCCGGCAATATGTAAGCATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTActct                                                                                                                   <  2:400786/140‑1 (MQ=255)
                          aTTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCGGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTa                                                                                                                  <  2:652289/140‑1 (MQ=255)
                           ttGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCATATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAg                                                                                                                 <  1:261864/140‑1 (MQ=255)
                            tGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGc                                                                                                                >  1:413402/1‑140 (MQ=255)
                               gCTAGGCCGGCAAAACGTAAGAATAAATGGTCGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGa                                                                                                             <  2:556117/140‑1 (MQ=255)
                                  aGGCCGGGAATAGGGAAGAATAAATGTTGGAGAAGGACGGGTTCGAACCGCCGACCCTCGGCTTGTAAGGCAGAGGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                          <  2:587490/140‑1 (MQ=17)
                                  aGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCTAACCGCCTACCCTCTGCTTGTAAGGCATATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                          <  1:261742/140‑1 (MQ=255)
                                  aGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCACCGTTCTCCTCTAGCGGAACg                                                                                                          >  1:411417/1‑140 (MQ=255)
                                   ggCGGGCAATATGTAAGAATCAACGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGt                                                                                                         <  1:411962/140‑1 (MQ=255)
                                      cGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCTGCTGAGTTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAg                                                                                                      <  1:245036/140‑1 (MQ=255)
                                        gCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGtcggtt                                                                                                    >  2:299156/1‑135 (MQ=255)
                                         cAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTACGTTc                                                                                                   >  2:483440/1‑140 (MQ=255)
                                          aaTATGTAAGAATAAGGGGTGGAGAAGGACGGGTTCGAACCGCCGACCCTCTGCGTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCg                                                                                                  >  2:659549/1‑140 (MQ=255)
                                            tatGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGAc                                                                                                >  2:57131/1‑140 (MQ=255)
                                              tGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTa                                                                                              >  2:553932/1‑140 (MQ=255)
                                                tAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                            <  2:485654/140‑1 (MQ=255)
                                                      tAAATGGTGGAGAATGACGGGTTCGCACCGCCGACCCTCTGCTTGTAAGGCAGATGATATCCCAGCTGAGCTAATTCTCCGAATTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGAc                                                                                      >  1:289617/1‑140 (MQ=255)
                                                        aaTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGAAACGTAAGTTCGACTACCATCAACGc                                                                                    >  1:101968/1‑140 (MQ=255)
                                                         aTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCt                                                                                   >  1:494525/1‑140 (MQ=255)
                                                         aTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCt                                                                                   <  1:589940/140‑1 (MQ=255)
                                                         aTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCt                                                                                   >  1:640932/1‑140 (MQ=255)
                                                         aTGGTGGAGAATGACGGGTCCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCt                                                                                   >  1:353204/1‑140 (MQ=255)
                                                         aTGGGGGGGGATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCt                                                                                   <  2:100378/140‑1 (MQ=255)
                                                          tggtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTa                                                                                  >  2:85228/1‑140 (MQ=255)
                                                             tggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAgg                                                                               <  1:268963/140‑1 (MQ=255)
                                                              ggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGAGGGCCGCAAGTTCGACTACCATCGACGCTAAGGa                                                                              <  1:659549/140‑1 (MQ=255)
                                                                agaATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGc                                                                            >  2:417219/1‑140 (MQ=255)
                                                                 gaATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCt                                                                           >  2:375300/1‑140 (MQ=255)
                                                                 gaATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCt                                                                           >  1:259475/1‑140 (MQ=255)
                                                                 gaATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCt                                                                           >  2:79450/1‑140 (MQ=255)
                                                                  aaTGACGGGTTCGAACCGCCCACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTCAGCTAATTCGCCGATTTAAAACTGCCTGGCAACGTTCTACTCTACCGGCACGTAAGTTCACCTACCCTCGAAGCTAAGgcgcct                                                                          >  2:598287/1‑138 (MQ=14)
                                                                    tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTaa                                                                        >  1:137305/1‑140 (MQ=255)
                                                                    tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTATCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTGaa                                                                        >  1:399555/1‑140 (MQ=255)
                                                                        gtgTTCGCACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTc                                                                    <  2:584978/138‑1 (MQ=255)
                                                                        gggTTCGAACCGCCGACCCTCTGCTTTTAAGGCAGATGCTCTCCCAGCTGATCGACTTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGATCGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTc                                                                    <  2:534275/140‑1 (MQ=14)
                                                                        gggTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCCCCGATAAAAAACTGCCTGACAACGTACTACTCAAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGACGCTGAACTTc                                                                    >  1:282780/1‑140 (MQ=14)
                                                                           ttacaaCCGCCGACCCGCATCTTGTAAGGCAGATGCTCTCCCAGCTGCGCGAACTCACCGATTTAAAACTGCCTGGCATCGTTGTACTCTATCGGAACGTAAGTTCGACTACCATCGACGCTAAGGATCTTAACTTCtgt                                                                 <  2:259859/136‑1 (MQ=14)
                                                                             cgcaCCGCCGACCATCTGCTTGTAAGGCAGATCCTCTCCCCGCTTATCTAATTCTCCGATTTAAAACTGCCTAGCAACGTTCTACTCTAGCGGAACTTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTgtgt                                                               <  2:554808/137‑1 (MQ=14)
                                                                             caacccgccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGTTAATTCTTCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTgtgt                                                               <  1:141715/136‑1 (MQ=255)
                                                                                   gccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCa                                                         <  2:286505/140‑1 (MQ=255)
                                                                                    ccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTTATCTCGCGCAACTTAAGTTCGACTACTATCGACCGTAAGGAGCTTAACTTCTGTGTTCGGCAt                                                        <  1:624014/140‑1 (MQ=14)
                                                                                          ctctGCTTTGAAGGCATATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCTTTGCAATTTTCTACTTTATCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAAc                                                  <  1:132829/140‑1 (MQ=14)
                                                                                                ttGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGgtgt                                            >  1:76879/1‑140 (MQ=255)
                                                                                                  ggaaGGCCGATGCTCTCCCAGCTGGGCTAATTCTCCGATTGAAAACTGCCTGGCAACGTTCTCCTCTAGCGGAACGTACGTTCGCCTACCCGCGACGCTAAGGCGCTTACCTTCTGTGTTCGGCAGGGGAACAGgtgtta                                          <  2:389061/138‑3 (MQ=255)
                                                                                                  gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGa                                          <  1:148121/140‑1 (MQ=255)
                                                                                                  gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTCCTGTGTTCGGCATGGGAACAGGTGTGa                                          >  2:107562/1‑140 (MQ=255)
                                                                                                   tAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                         <  1:466170/140‑1 (MQ=255)
                                                                                                    aaGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGCCATGGGAACAGGTGTGAcc                                        >  2:245186/1‑140 (MQ=255)
                                                                                                      ggCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctc                                      >  1:307681/1‑140 (MQ=255)
                                                                                                        cAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctcct                                    >  1:364116/1‑140 (MQ=255)
                                                                                                        cAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCACGGCACCAGGTGTGAcctcct                                    >  2:97936/1‑140 (MQ=255)
                                                                                                             gCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCta                               >  1:652868/1‑140 (MQ=255)
                                                                                                              ctctCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCACCGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCACCTTGCtat                              >  1:127611/1‑140 (MQ=255)
                                                                                                              ctctCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCAGGGGAACAGGTGTGACCTCCTCGCtat                              >  2:101321/1‑140 (MQ=255)
                                                                                                              ctctCCCAGCTGAGCTAATTCTCCGATGTAAAACTGCCTGGCAACCTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTATCTTCTGTGTTCGGCACGGGAACAGGTGTGACCTCCTTGCtat                              <  2:319036/140‑1 (MQ=255)
                                                                                                               tctcCCTGCTGAGCTGATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtata                             <  2:340270/140‑1 (MQ=255)
                                                                                                               tcccccAGCTGAGCTAATTCTCCGATTTACAACTGCCTGGCAACGCTTTTCTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtata                             <  1:594716/137‑1 (MQ=14)
                                                                                                                ctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATTGGAACAGGTGTGACCTCCTTGCTATAg                            >  2:367251/1‑140 (MQ=255)
                                                                                                                ctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGAGACCACCTTGCTAAAg                            >  2:30331/1‑140 (MQ=255)
                                                                                                                ctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGAAAGTTCGACTACCATCGACGATAAGGAGCTTCACTTCTGTGTTCGGCATGGGAACAGATGTGCACTACTTGCTATAg                            >  2:44663/1‑140 (MQ=17)
                                                                                                                 tcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGt                           >  2:39250/1‑140 (MQ=255)
                                                                                                                 tcCCAGCTGAGCTAATTCGCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGt                           <  1:381092/140‑1 (MQ=255)
                                                                                                                  cccAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTc                          >  2:658622/1‑140 (MQ=255)
                                                                                                                        tgggCTAATTCTCCGGTTTAAAACTGCCTGGCAACTGTCTCCTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCCGTGTTCGGCATGGTAACAGGTGTGACCTCCTTGCTATAGTCACCAGa                    <  2:332811/137‑1 (MQ=14)
                                                                                                                         gggCTAATTCTCCGATTTAAAACTGCCTGGCAACGGTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGTAACAGGTGTGACCTCCTTGCTATAGTCACCAGAc                   <  2:3635/138‑1 (MQ=255)
                                                                                                                          aGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACa                  >  1:273308/1‑140 (MQ=255)
                                                                                                                            cTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACata                <  1:483440/140‑1 (MQ=255)
                                                                                                                            cTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAACATCGACGCTAAGAAGCTTAACTTCTGTGTTCGGCATGGAAACAGGTGTGACCTCCTTGCTATAGTCACCAGACata                >  1:192496/1‑140 (MQ=255)
                                                                                                                                 tctcCGATGTAAAACCGCCCGGCAACTTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAAt           <  2:249581/140‑1 (MQ=255)
                                                                                                                                  ctcCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATg          <  1:503907/140‑1 (MQ=255)
                                                                                                                                  ctcCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATg          <  2:661984/140‑1 (MQ=255)
                                                                                                                                      gATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAt      <  1:79450/140‑1 (MQ=38)
                                                                                                                                        tttAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAttt    <  2:259475/140‑1 (MQ=37)
                                                                                                                                          tAAAACTGCCTGTCAACGTTCTACTCCAGCGGAACGTAAGTTCGACTACCAGCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACATGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTtat  <  2:108643/140‑1 (MQ=255)
                                                                                                                                          tAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTtat  >  2:564821/1‑140 (MQ=34)
                                                                                                                                           |                                                                                                                                          
CTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTAT  >  CP000730/1998139‑1998416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.