New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2864298	22 (0.810)	3 (0.110)	3/258	4.1	11.5%	intergenic (+62/+1487)	USA300HOU_2709/USA300HOU_2710	hypothetical protein/hypothetical membrane protein
	?	CP000730	= 2864313	25 (0.960)					intergenic (+77/+1472)	USA300HOU_2709/USA300HOU_2710	hypothetical protein/hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAACACCAATGATAGGCATTCCAGCTGGTTTATTAGGTGGCTCTTATTATTTAAAACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2864157‑2864298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaagCAGCGATAAACGCTACTTGTTGATATTAAAATCTGACTTGAAAGGTCAT  <  CP000730/2864313‑2864265                                                                                                                                                                                                 CAACACCAATGATAGGCATTCCAGCTGGTTTATTAGGTGGCTCTTATTATTTAAAACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAA                                                    >  2:191545/1‑141               GGCATTCCAGCTGGTTTATTAGGTGGCTCTTATTATTTAAAACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGCAGCGATAAACGC                                      <  1:96670/141‑1                                                       AACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGCAGCGATAAACGCTACTTGTTGATATTAAAATCTGACTTGAAAGGTCAT  <  1:148379/137‑1                                                       AACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGCAGCGATAAACGCTACTTGTTGATATTAAAATCTGACTTGAAAGGTCAT  >  2:148379/1‑137                                                                                                                                                                                                 CAACACCAATGATAGGCATTCCAGCTGGTTTATTAGGTGGCTCTTATTATTTAAAACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2864157‑2864298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaagCAGCGATAAACGCTACTTGTTGATATTAAAATCTGACTTGAAAGGTCAT  <  CP000730/2864313‑2864265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.