| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2864298 | 22 (0.810) | 3 (0.110) | 3/258 | 4.1 | 11.5% | intergenic (+62/+1487) | USA300HOU_2709/USA300HOU_2710 | hypothetical protein/hypothetical membrane protein |
| ? | CP000730 | = 2864313 | 25 (0.960) | intergenic (+77/+1472) | USA300HOU_2709/USA300HOU_2710 | hypothetical protein/hypothetical membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGGTTTATTAGGTGGCTCTTATTATTTAAAACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTTATAAACCCCTTTAAATCAACGTTTCTAAGGTTTTTAAA > CP000730/2864181‑2864450 | ctggactatcaGGTGGCTCTTATTATTTAAAACGTCGTGAAGAACAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTCATCGCTGCTTGcttt > 2:28294/7‑141 (MQ=255)cTGGTTTATTAGGTGGCTCTTACTATTTAAAACGTCGTGAAGAAAAAGGCAAGTAACCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGtttt > 2:298540/1‑141 (MQ=255) tattaGGTGGCTCTTATTATTTAAAACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATgg > 1:58113/1‑141 (MQ=255) gCTCTTATTATTTAAAACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTtat < 2:266621/141‑1 (MQ=255) tttAAAACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAAtcatca < 1:149684/141‑1 (MQ=255) tttAAAACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAAtcatca > 2:149684/1‑141 (MQ=255) aGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACtt < 1:120677/141‑1 (MQ=255) ggCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACttt < 1:103278/141‑1 (MQ=255) tAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAAc < 2:188469/141‑1 (MQ=255) aGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTa > 2:229117/1‑141 (MQ=255) aGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTa < 1:68512/141‑1 (MQ=255) ccATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAacac < 2:99945/141‑1 (MQ=255) aGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAGAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGAc < 2:298435/141‑1 (MQ=255) aGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATACAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGAc < 2:298479/141‑1 (MQ=255) cTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAAtttt > 2:158038/1‑141 (MQ=255) aGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTTATAAAccc > 2:144062/1‑141 (MQ=255) aGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTTATAAAccc > 1:282265/1‑141 (MQ=255) aTTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTTATAAACCCCt < 1:229117/141‑1 (MQ=255) tttAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTTATAAACCCCttt > 1:167271/1‑141 (MQ=255) tCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTTATAAACCCCTTTAAATCaa > 2:170183/1‑141 (MQ=255) aGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTTATAAACCCCTTTAAATCAACGTTTc < 1:298540/141‑1 (MQ=255) aGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTTATAAACCCCTTTAAATCAACGTTTc < 2:31158/141‑1 (MQ=255) gTTTACCGCTGCTTGTTTTTTTTTTTTTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTTATAAACCCCTTTAAATCAACGTTTCTAAGGt > 2:70641/1‑141 (MQ=255) cGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTCATAAACCCCTTTAAATCAACGTTTCTAAGGTTTTTaa < 1:220767/141‑1 (MQ=255) gctgctTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTTATAAACCCCTTTAAATCAACGTTTCTAAGGTTTTTaaa > 2:223703/1‑141 (MQ=255) | CTGGTTTATTAGGTGGCTCTTATTATTTAAAACGTCGTGAAGAAAAAGGCAAGTAAGCACATTCCATCGGTATAGAACATTGCTATGACCTTTCAAGTCAGATTTTAATATCAACAAGTAGCGTTTATCGCTGCTTGTTTTTTATGGATTGCTTATAAAATCATCATGTTTAAACGATATGTCACTTTGAAAACTAGCAAACACCATAAAAGACTACAATTTTTTTATTTTTATAAACCCCTTTAAATCAACGTTTCTAAGGTTTTTAAA > CP000730/2864181‑2864450 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |