New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 97091155 (0.870)3 (0.050) 3/254 10.6 4.9% intergenic (+257/‑72) fahA/USA300HOU_0928 fumarylacetoacetase/hypothetical membrane protein
?CP000730 = 970942 65 (1.100)intergenic (+288/‑41) fahA/USA300HOU_0928 fumarylacetoacetase/hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/970768‑970911
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attaaattaAAGCTTCTTGGGATTAATACCCACTTGCTTGTAATTTAATCATGATT  <  CP000730/970942‑970896
                                                                                                                                                                                               
GAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAA                                                    >  1:116246/1‑141
 AAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCGCAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATGTTCGTGTATAATCAAATCATGATTAAAT                                                   <  2:301839/141‑1
  AATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATT                                                  >  2:636139/1‑141
   ATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTAATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATca                                                 >  1:251771/1‑139
                                  ACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTAAAGCTTCTTGGGATTAATACCCACTTGCTTG                  >  1:261794/1‑141
                                        GATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTAAAGCTTCTTGGGATTAATACCCACTTGCTTGTAATTT            <  1:601423/141‑1
                                                  ATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTAAAGCTTCTTGGGATTAATACCCACTTGCTTGTAATTTAATCATGATT  <  2:261794/141‑1
                                                                                                     GGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATT                                                  <  1:481617/42‑1
                                                                                                     GGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATT                                                  >  2:481617/1‑42
                                                                                                                                                                                               
GAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/970768‑970911
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attaaattaAAGCTTCTTGGGATTAATACCCACTTGCTTGTAATTTAATCATGATT  <  CP000730/970942‑970896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.