New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 970911	55 (0.870)	3 (0.050)	3/254	10.6	4.9%	intergenic (+257/‑72)	fahA/USA300HOU_0928	fumarylacetoacetase/hypothetical membrane protein
	?	CP000730	= 970942	65 (1.100)					intergenic (+288/‑41)	fahA/USA300HOU_0928	fumarylacetoacetase/hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGATTATTTTATTTATCGCTACATACTTAA  >  CP000730/970778‑971046                                                                                                                                      |                                                                                                                                        tatTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTAcaagcaa                                                                                                                                  >  1:470415/1‑141 (MQ=255)  atTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTAcaagcaag                                                                                                                                 <  1:425424/141‑1 (MQ=255)            agtTGATTATTTTACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTaa                                                                                                                       <  2:553857/141‑1 (MQ=255)                 attattTTACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCa                                                                                                                  <  2:451496/141‑1 (MQ=255)                     ttttACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCaagaa                                                                                                              <  1:528251/141‑1 (MQ=255)                       ttACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTAATGTATAATAAAATGATGCTTATAGTACAAGCAAGTGGGTATTGATACAAAGAAGc                                                                                                            >  1:204942/1‑141 (MQ=255)                        tACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCt                                                                                                           <  1:669981/141‑1 (MQ=255)                         aCAGCAGATTCACAATATTCTAATAAGGAATAAAATGTACAGATCTCCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCtt                                                                                                          >  1:162224/1‑141 (MQ=255)                                    acaATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTtaataa                                                                                               >  2:240015/1‑141 (MQ=255)                                    acaATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTtaataa                                                                                               <  2:467301/141‑1 (MQ=255)                                             taataaGGAATAAAATGTCATGTTATTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATataaataa                                                                                      >  1:91893/1‑141 (MQ=255)                                              aataaGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAaataat                                                                                     >  1:195646/1‑141 (MQ=255)                                              aataaGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAaataat                                                                                     <  1:235796/141‑1 (MQ=255)                                              aataaGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAaataat                                                                                     <  1:636139/141‑1 (MQ=255)                                              aataaGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAaataat                                                                                     >  1:334760/1‑141 (MQ=255)                                              aataaGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAaataat                                                                                     >  1:416473/1‑141 (MQ=255)                                              aataaGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGAGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAaataat                                                                                     >  2:611463/1‑141 (MQ=255)                                               ataaGGAATAAATTGTCATGTTCTTCCTCTCATATATAGAAGTGTGGTAGAATATATATTCGTGTATTATCATATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAAtt                                                                                    <  2:420869/141‑1 (MQ=255)                                               ataaGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAAtt                                                                                    >  2:123581/1‑141 (MQ=255)                                               ataaGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAAtt                                                                                    >  2:22365/1‑141 (MQ=255)                                                      aTAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTgg                                                                             <  1:80887/141‑1 (MQ=255)                                                         aaaTGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTggggg                                                                          >  1:37824/1‑141 (MQ=255)                                                         aaaTGTCATGTTCTTCCTCTCAAATAGAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATCAATCCCAAGAAGCTGTAATTGAATAATATAAATAATAAAAGCggggg                                                                          >  2:360161/1‑141 (MQ=255)                                                                         ctctCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGttaca                                                          <  1:395833/141‑1 (MQ=255)                                                                           ctcAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGttacatt                                                        >  2:496906/1‑141 (MQ=255)                                                                           ctcAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGttacatt                                                        >  2:231894/1‑141 (MQ=255)                                                                               aaTATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGttacatttaca                                                    >  1:113676/1‑141 (MQ=255)                                                                                   taGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACatata                                                <  1:400859/141‑1 (MQ=255)                                                                                   taGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACatata                                                <  1:102666/141‑1 (MQ=255)                                                                                    aGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAg                                                                                <  2:305013/108‑1 (MQ=255)                                                                                    aGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAg                                                                                >  1:305013/1‑108 (MQ=255)                                                                                     gAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATAtt                                              >  1:691853/1‑141 (MQ=255)                                                                                        gtgtGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAg                                           <  2:113676/141‑1 (MQ=255)                                                                                         tgtgGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGt                                          <  2:162224/141‑1 (MQ=255)                                                                                          gtgGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGtt                                         <  1:674196/141‑1 (MQ=255)                                                                                              tAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGt                                     >  1:479757/1‑141 (MQ=255)                                                                                               aGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTa                                    >  1:431249/1‑141 (MQ=255)                                                                                                  atatatatTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTa                                 <  2:114565/141‑1 (MQ=255)                                                                                                  atatatatTCGTGTATAATCAAACCATGATTAAATTACAAGCAAGTGGGTATTAATGCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTTGGTATTa                                 <  2:328945/141‑1 (MQ=255)                                                                                                     tatatTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCg                              <  2:316914/141‑1 (MQ=255)                                                                                                     tatatTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCg                              <  1:166427/141‑1 (MQ=255)                                                                                                      atatTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGa                             >  1:10183/1‑141 (MQ=255)                                                                                                        atTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGatt                           >  1:114691/1‑141 (MQ=255)                                                                                                         ttCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGatta                          >  1:624257/1‑141 (MQ=255)                                                                                                          tCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGAGattat                         >  2:281283/1‑141 (MQ=255)                                                                                                            gtgtATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGAttattt                       >  1:45569/1‑141 (MQ=255)                                                                                                              gtATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGATTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGAttatttta                     <  1:317182/141‑1 (MQ=255)                                                                                                                     caaatcaTGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGATTATTTTATTTATCg              <  2:79353/141‑1 (MQ=255)                                                                                                                     caaatcaTGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGATTATTTTATTTATCg              >  1:293999/1‑141 (MQ=255)                                                                                                                         tcaTGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGATTATTTTATTTATCGCTAc          >  1:512758/1‑141 (MQ=255)                                                                                                                         tcaTGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGATTATTTTATTTATCGCTAc          >  1:211044/1‑141 (MQ=255)                                                                                                                            tGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGATTATTTTATTTATCGCTACATa       >  1:161589/1‑141 (MQ=255)                                                                                                                             gATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGATTATTTTATTTATCGCTACATAc      <  1:236225/141‑1 (MQ=255)                                                                                                                               ttAAATTACAAGCAAGTGGGTATGAATCCCAAGAAGCTTTAATTTAATAATAGAAATAATGAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGATTGTTTTATTTATCGCTACATACtt    >  2:176503/1‑141 (MQ=255)                                                                                                                                 aaaTTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGATTATTTTATTTATCGCTACATACTTaa  >  2:493492/1‑141 (MQ=255)                                                                                                                                      |                                                                                                                                        TATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCTAATAAGGAATAAAATGTCATGTTCTTCCTCTCAAATATAGAAGTGTGGTAGAATATATATTCGTGTATAATCAAATCATGATTAAATTACAAGCAAGTGGGTATTAATCCCAAGAAGCTTTAATTTAATAATATAAATAATTAAAGTGGGGGGAATCAGTATGTTACATTTACATATATTAAGTTGGGTATTAGCGATTATTTTATTTATCGCTACATACTTAA  >  CP000730/970778‑971046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.