| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1465231 | 67 (1.060) | 3 (0.050) | 3/258 | 10.7 | 4.7% | intergenic (‑75/+125) | dfrB/thyA | dihydrofolate reductase/thymidylate synthase |
| ? | CP000730 | = 1465259 | 59 (0.980) | intergenic (‑103/+97) | dfrB/thyA | dihydrofolate reductase/thymidylate synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCCAAGGTAATTGATTTTCAAAACCAATTACTCGTTGCAAGTCATGTGCAACTAGAATGGATAAAGTCATAATTATCCTCCTTCTTCTATCATTTCATTTTTTATTACTAAGTTATCTTTAATTTAACACAATTTTTATCATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1465086‑1465231‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcataaaTTATGCAAAATCATTATTTCTATCACACTTTATGATAAAAATTGTGTTAAATTAAAGATAACTTAGTAATAAAAAATGAAATGATAGAAGAAGGAGGATAATTATGACTTTATCCATTCTAGTTGCACATGACTTGCAAC < CP000730/1465259‑1465120 TGCCAAGGTAATTGATTTTCAAAACCAATTACTCGTTGCAAGTCATGTGCAACTAGAATGGATAAAGTCATAATTATTCTTCTTCTTGTTTTCTTTAATTTTTTCTTTTTAAGTTATATTTAATTTAATACAATTTTTATt > 1:243276/1‑140TGCCAAGGTAATTGATTTTCAAAACCAATTACTCGTTGCAAGTCATGTGCAACTAGAATGGATAAAGTCATAATTATCCTCCTTCTTCTATCATTTCATTTTTTATTACTAAGTTATCTTTAATTTAACACAATTTTTATC > 1:186327/1‑141TGCCAAGGTAATTGATTTTCAAAACCAATTACTCGTTGCAAGTCATGTGCAACTAGAATGGATAAAGTCATAATTATCCTCCTTCTTCTATCATTTCATTTTTTATTACTAAGTTATCTTTAATTTAACACAATTTTTATC < 2:233894/141‑1 AAGGTAATTGATTTTCAAAACCAATTACTCGTTGCAAGTCATGTGCAACTAGAATGGATAAAGTCATAATTATCCTCCTTCTTCTATCATTTCATTTTTTATTACTAAGTTATCTTTAATTTAACACAATTTTTATCATAA > 2:639509/1‑141 AAGGTAATTGATTTTCAAAACCAATTACTCGTTGCAAGTCATGTGCAACTAGAATGGATAAAGTCATAATTATCCTCCTTCTTCTATCATTTCATTTTTTATTACTAAGTTATCTTTAATTTAACACAATTTTTATCATAA < 2:249783/141‑1 CTAGAATGGATAAAGTCATAATTATCCTCCTTCTTCTATCATTTCATTTTTTATTACTAAGTTATCTTTAATTTAACACAATTTTTATCATAAATTATGCAAAATCATTATTTCTATCACACTTTATGATAAAAATTGTGT < 2:639349/141‑1 TAGAATGGATAAAGTCATAATTATCCTCCTTCTTCTATCATTTCATTTTTTATTACTAAGTTATCTTTAATTTAACACAATTTTTATCATAAATTATGCAAAATCATTATTTCTATCACACTTTATGATAAA < 2:30981/132‑1 TAGAATGGATAAAGTCATAATTATCCTCCTTCTTCTATCATTTCATTTTTTATTACTAAGTTATCTTTAATTTAACACAATTTTTATCATAAATTATGCAAAATCATTATTTCTATCACACTTTATGATAAA > 1:30981/1‑132 TCATAAATTATGCAAAATCATTATTTCTATCACACTTTATGATAAAAATTGTGTTAAATTAAAGATAACTTAGTAATAAAAAATGAAATGATAGAAGAAGGAGGATAATTATGACTTTATCCATTCTAGTTGCACATGACT > 2:242307/1‑141 CATAAATTATGCAAAATCATTATTTCTATCACACTTTATGATAAAAATTGTGTTAAATTAAAGATAACTTAGTAATAAAAAATGAAATGATAGAAGAAGGAGGATAATTATGACTTTATCCATTCTAGTTGCACATGACTT > 1:444588/1‑141 ATAAATTATGCAAAATCATTATTTCTATCACACTTTATGATAAAAATTGTGTTAAATTAAAGATAACTTAGTAATAAAAAATGAAATGATAGAAGAAGGAGGATAATTATGACTTTATCCATTCTAGTTGCACATGACTTG > 2:673326/1‑141 AATTATGCAAAATCATTATTTCTATCACACTTTATGATAAAAATTGTGTTAAATTAAAGATAACTTAGTAATAAAAAATGAAATGATAGAAGAAGGAGGATAATTATGACTTTATCCATTCTAGTTGCACATGACTTGCAA > 2:461156/1‑141 AATTATGCAAAATCATTATTTCTATCACACTTTATGATAAAAATTGTGTTAAATTAAAGATAACTTAGTAATAAAAAATGAAATGATAGAAGAAGGAGGATAATTATGACTTTATCCATTCTAGTTGCACATGACTTGCAA < 1:104161/141‑1 ATTATGCAAAATCATTATTTCTATCACACTTTATGATAAAAATTGTGTTAAATTAAAGATAACTTAGTAATAAAAAATGAAATGATAGAAGAAGGAGGATAATTATGACTTTATCCATTCTAGTTGCACATGACTTGCAAC < 1:528947/141‑1 TGCCAAGGTAATTGATTTTCAAAACCAATTACTCGTTGCAAGTCATGTGCAACTAGAATGGATAAAGTCATAATTATCCTCCTTCTTCTATCATTTCATTTTTTATTACTAAGTTATCTTTAATTTAACACAATTTTTATCATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1465086‑1465231‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcataaaTTATGCAAAATCATTATTTCTATCACACTTTATGATAAAAATTGTGTTAAATTAAAGATAACTTAGTAATAAAAAATGAAATGATAGAAGAAGGAGGATAATTATGACTTTATCCATTCTAGTTGCACATGACTTGCAAC < CP000730/1465259‑1465120 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |