New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2830190 =	51 (0.800)	3 (0.050)	3/250	10.5	6.3%	intergenic (+18/+173)	icaC/USA300HOU_2670	intercellular adhesion protein C/hypothetical protein
	?	CP000730	2830247 =	42 (0.720)					intergenic (+75/+116)	icaC/USA300HOU_2670	intercellular adhesion protein C/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGC  >  CP000730/2830114‑2830384                                                                                                                                      |                                                                                                                                          atatCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGt                                                                                                                                    >  1:616546/1‑141 (MQ=255) atatCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGt                                                                                                                                    >  2:436945/1‑141 (MQ=255)      tttAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATAc                                                                                                                               >  2:99551/1‑141 (MQ=255)             ttattaTTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATAtt                                                                                                                        <  2:597005/141‑1 (MQ=255)              tattatTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTc                                                                                                                       >  1:490214/1‑141 (MQ=255)              tattatTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTc                                                                                                                       <  2:81579/141‑1 (MQ=255)                ttattGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTa                                                                                                                     <  1:659806/141‑1 (MQ=255)                     ggAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGc                                                                                                                <  1:404228/141‑1 (MQ=255)                     ggAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGc                                                                                                                >  1:468979/1‑141 (MQ=255)                     ggAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGc                                                                                                                >  2:522271/1‑141 (MQ=255)                      gAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGca                                                                                                               >  1:244316/1‑141 (MQ=255)                            aacCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTa                                                                                                         >  1:136704/1‑141 (MQ=255)                               cATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAAc                                                                                                      >  2:109317/1‑141 (MQ=255)                               cATATAAATTGAACATTAATGCTGATTAATTATTAAGCTATGTTAAAAACACGCGGTGGACGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATAAATTCTAATTGCGTATTTAAAc                                                                                                      >  2:138292/1‑141 (MQ=255)                                 tataAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACtt                                                                                                    <  2:28378/141‑1 (MQ=255)                                    aaaTTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGt                                                                                                 >  1:286973/1‑141 (MQ=255)                                     aaTTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTa                                                                                                >  1:193325/1‑141 (MQ=255)                                             aTTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCaa                                                                                        <  1:159139/141‑1 (MQ=255)                                                aaTGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATgg                                                                                     >  1:575840/1‑141 (MQ=255)                                                    cTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGt                                                                                 <  1:569084/141‑1 (MQ=255)                                                           attattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAg                                                                          >  2:348164/1‑141 (MQ=255)                                                           attattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAg                                                                          >  2:613195/1‑141 (MQ=255)                                                              attaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGaaa                                                                       >  1:461972/1‑141 (MQ=255)                                                                         ttAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCg                                                            <  1:611910/141‑1 (MQ=255)                                                                                  cgcgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAattta                                                   >  1:74671/1‑141 (MQ=255)                                                                                  cgcgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAattta                                                   >  2:564538/1‑141 (MQ=255)                                                                                  cgcgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAattta                                                   >  2:408373/1‑141 (MQ=255)                                                                                    cgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttatt                                                 >  2:607629/1‑141 (MQ=255)                                                                                                  aGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAccc                                   <  2:136704/141‑1 (MQ=255)                                                                                                   gTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGGTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAcccc                                  <  1:702851/141‑1 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatt                                                     <  2:290003/112‑1 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatt                                                     >  1:290003/1‑112 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                              <  2:249840/119‑1 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                              >  1:249840/1‑119 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                              >  1:249830/1‑119 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                              <  2:249830/119‑1 (MQ=255)                                                                                                              ctgactTCGTTTTAACGCATGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGTGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACat                       <  2:557971/141‑1 (MQ=255)                                                                                                                 actTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACattat                    >  1:18103/1‑141 (MQ=255)                                                                                                                       ttttACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAAc              <  1:164626/141‑1 (MQ=255)                                                                                                                         ttACCGTGTGTTTAATATTGTTATACATATATTCTAATTGCACATTGAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCt            <  2:410558/141‑1 (MQ=255)                                                                                                                          tACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTg           <  1:190339/141‑1 (MQ=255)                                                                                                                          tACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTg           >  1:109721/1‑141 (MQ=255)                                                                                                                            ccGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCGCAACTTGCACATTATTGTAACCTGAc         >  2:558248/1‑141 (MQ=255)                                                                                                                                   tttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATCGTTACCGGACTTTCCGc  >  1:38083/1‑141 (MQ=255)                                                                                                                                      |                                                                                                                                          ATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGC  >  CP000730/2830114‑2830384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.