BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	52495 =	62 (0.990)	111 (1.780) +T	3/256	NT	63.3%	intergenic (+105/‑568)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
*	?	CP000730	= 52988	68 (1.080)	111 (1.780) +T	3/256	NT	63.3%	intergenic (+598/‑75)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator

Only 100 of 125 total aligned reads displayed.

TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/52633‑52495

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTAC  <  CP000730/52988‑52862

TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGT                                                                                                                                 >  1:696977/1‑140

 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTATTACTATGATTTTAAACATTTCCACTCGTTATTTCACGTt                                                                                                                                >  2:377025/1‑139

 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTG                                                                                                                                <  2:647400/140‑1

  tccAACGATTCCTCTTATTTTTTCACGTGTTTTTCGCGCGATTACTCCGATGATTTCAAACGATTCCTCTGATTATTTCACTTGATTTTCGCGCGATTACTCCGATGATTTCAAACGATTCCTCTGATTATTTCACGTGA                                                                                                                               <  2:81283/137‑1

   CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGCTGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTAGGGTGAATTCAAATGTTTCTATTGATTATTTCACGTGAT                                                                                                                              >  1:657999/1‑140

   CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTATTTCGATTATTTCAAACGATTCCTCTGATTATTTCACGTGAT                                                                                                                              >  2:14588/1‑140

   CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGCTGCTTTCAAGCGCTTCATCTGATTATTTCCCGTGgt                                                                                                                              >  2:566556/1‑138

   CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAAGATTCCTCTGATTATTTCACGTGAT                                                                                                                              >  1:336271/1‑140

    AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTAATACGATGAGTTCAAACGATTCCTCTGATTATTTCACGTGATTTTTGCGCGATTCTTACGATGTTTTCAAACTTTTCCTCTAATTATTTCACCTGATT                                                                                                                             >  2:512863/1‑140

    AAACGATTCCTCTCACTACTTCACGGGATTTTCGCGCGATTACTACGATGATTTCAATCGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT                                                                                                                             <  1:6061/140‑1

     AACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTCCTACGATGTTTTTAAACGATTGCTCTCATTATTTCACGTGATTT                                                                                                                            >  2:222341/1‑140

     AACGATTCCACTTATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTT                                                                                                                            <  2:427317/140‑1

       CGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGCTTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCTCGATTTTTACTCTAATTTCAAACGTTTCCTCTGATTATTTCACGTTATTTTt                                                                                                                          >  2:286635/1‑139

       CGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTTCTCTGATTATTTCACGTGATTTTt                                                                                                                          >  1:692481/1‑139

       CGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTC                                                                                                                          >  2:581309/1‑140

       CGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGAATACTACGATAATATAAAACGAATCCTCTGATTATTTCACGTGAGTTTC                                                                                                                          >  1:421187/1‑140

              TCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTTCTACGATGATTTTAAAAGTTTCTAAAGTTTATTTCACGTGATTTTCGCGTGAT                                                                                                                   >  1:95573/1‑140

              TCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTTATTTTCGCGCGAT                                                                                                                   >  1:699271/1‑140

              TCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTAAAACGAGTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGAGGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGAT                                                                                                                   <  1:107201/140‑1

                 GATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCACACGATTCCTTTGAGTATTTCACGTGATTTTCGCTCGATTtc                                                                                                                >  2:413836/1‑138

                    TATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTAC                                                                                                             <  1:642240/140‑1

                      TTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTAAAACGATTCCTCTGATTATTTCAAGTGATTTTCGCGAGATcggaagag                                                                                                           >  1:519420/1‑132

                          ACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTTGCGCCATTACTACTATGtt                                                                                                       >  2:117296/1‑138

                          ACGTGATTTTCGAGCCATTACTACGATGATTTCAAACGATTCCTCTTATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT                                                                                                       <  2:615341/140‑1

                            GTGCTTTTCGCGCGATTACTACTATGATTTCAAACGATTCCTCTGATTATTTCTCGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTAACGTGATTTTCGCGCGATTACTACGATGATTT                                                                                                     <  1:123/140‑1

                              GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGAGATTTCTACGATGATTTCAAAGGATTGCTCGCATTATTTTACGTGATTTTCGGGAGATTATTAGGGTGATTTaa                                                                                                   >  2:232509/1‑138

                                cTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                 <  2:349482/139‑1

                                TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                 <  1:389291/140‑1

                                TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                 <  1:277201/140‑1

                                TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                 <  1:456903/140‑1

                                 ttcccCGCGATTACTACTATTATTTCAAACGATTCCTCTGCTTACTTCCCATGACTTCCGCTCGATTACTACGCTGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAC                                                                                                <  2:565282/135‑1

                                 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTATGATGATTTAAAAC                                                                                                >  1:18490/1‑140

                                  TTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTCATACGATGATTTCAAACG                                                                                               >  1:565282/1‑140

                                  TTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTT                                                                                                                            <  2:400583/111‑1

                                   TCGCGCGATTACTACGATGATCTCCAACGATTCCTCTTATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGA                                                                                              <  2:276961/140‑1

                                    CGCGCGATTACTACGTTGCTTTCAAGCGATTCTTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAGGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGAT                                                                                             <  1:439904/140‑1

                                    CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGAT                                                                                             <  1:636421/140‑1

                                    CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGAT                                                                                             >  2:642240/1‑140

                                    CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATGTCAAACGAT                                                                                             <  1:532891/140‑1

                                    CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCACGCCATTTTTACGATAATTTAAAAacta                                                                                             >  2:408647/1‑136

                                     GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTT                                                                                                                           >  2:570668/1‑109

                                      CGCGATTACTTCTATTATCTCAAACGATTCCTCTTATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTC                                                                                           <  2:675758/140‑1

                                      CGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTCCACGTGATTTTCTCTCGATTTCTACGATGTTTTCAAACatttc                                                                                           >  2:484568/1‑135

                                       ccgtTTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCC                                                                                          <  2:81803/136‑1

                                       aCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCC                                                                                          <  1:152182/139‑1

                                       GCGATTTCTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGGGACAATACAACGGTGATTTCAAACGATGCCTCTGATTATCTTACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCC                                                                                          <  1:345934/140‑1

                                       GCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGTTTCC                                                                                          >  1:472729/1‑140

                                        CGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCCAACGATTCCTCTGACTATTTCACGTGATTTACGCGCGATTACTTCGATGATTTGAAACGGTTCCT                                                                                         >  1:305739/1‑140

                                         GATTACTACGATCATTTCAAACGTTTCCTCTGATTATTTCCCGTCATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTC                                                                                        <  2:637047/140‑1

                                          ATTACTCCGATGCCTTCAAACTCTTCCCCTGATTACATCCCGTTATTTTCGCGCGATTACTTCGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCT                                                                                       <  2:61405/140‑1

                                          ATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCT                                                                                       <  1:355966/140‑1

                                             ACTACGATGATTTCTAACGATTCCTCTTATTATTTGATGTGATTTTCGCGCGTTTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTTCGATGCTTTCAAACGATTCCTCTGAT                                                                                    <  1:429367/140‑1

                                             ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGAT                                                                                    >  2:532891/1‑140

                                              CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAGCGATTCCTCTGATT                                                                                   >  1:661458/1‑140

                                              CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCCCGATTATTACGATGATTTCAAACGATTCCTCTGATT                                                                                   >  2:490001/1‑140

                                                ACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTAT                                                                                 >  1:249943/1‑140

                                                ACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACT                                                                                                               >  2:69197/1‑110

                                                   ATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTC                                                                              >  1:426060/1‑140

                                                     tATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCAC                                                                            <  2:624536/139‑1

                                                       TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGACTTCAAACGATTCCACCGATTATTTCACat                                                                          >  2:609531/1‑138

                                                          CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACTATGATTTCAAACGAATCCTCTGATTATTTCAGGCGAa                                                                       >  2:428627/1‑139

                                                          CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT                                                                       >  1:272049/1‑140

                                                          CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTACACGAGAT                                                                       >  2:504081/1‑140

                                                           AAACGATTCCTCTGATTATTTCACGTGATTTTCTCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATT                                                                      >  1:674646/1‑140

                                                           AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                 <  2:370402/113‑1

                                                           AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGA                                                                                                           <  2:4645/103‑1

                                                           AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGA                                                                                                           >  1:4645/1‑103

                                                                ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTTACACGATTACTATGATTATTTCAgggaattgttga                                                                 >  2:49723/1‑128

                                                                  TCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTTCTACGATTTTTTAAAACGATTCCTCTGATTATTTTACCCTATTTTCaaaa                                                               >  2:293617/1‑136

                                                                    CTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCG                                                                                                                         <  2:88338/80‑1

                                                                      CTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAC                                                                                                <  1:134396/103‑1

                                                                          TTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                 <  1:191428/98‑1

                                                                             TTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGA                                                                                              <  1:241285/98‑1

                                                                              TTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGAT                                                                                                       <  2:39759/88‑1

                                                                                 ACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACG                                                                                               <  1:309749/93‑1

                                                                                      ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCAC                                                                            >  1:73586/1‑107

                                                                                      ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGAT                                                                                             <  1:542454/90‑1

                                                                                       TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGAT                                                                                             <  1:578284/89‑1

                                                                                       TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGC                                                                                                                      >  1:615101/1‑64

                                                                                       TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGC                                                                                                                      <  2:615101/64‑1

                                                                                       TTTTCGCGCGATTACTACGATGATTTCAAACGATTACTCTGATTATTTCAGGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTGCTCTGATTATTTCAAGCGATTTTAAAGCGATTAATACTATGATTTGAAA                                          >  1:44985/1‑140

                                                                                         TTCGCGCGATTACTACGATAATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTG                                                                                      >  1:387777/1‑94

                                                                                          TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTAC                                                                                                                >  2:368542/1‑67

                                                                                          TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTAC                                                                                                                <  1:368542/67‑1

                                                                                           CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCG                                                                                                                         >  1:616855/1‑57

                                                                                             CGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTT                                                                               <  1:550226/97‑1

                                                                                             CGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTT                                                                               >  2:550226/1‑97

                                                                                                  TTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCG                                                                                                                       >  1:119663/1‑52

                                                                                                  TTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCG                                                                                                                       <  2:119663/52‑1

                                                                                                     CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTC                                                                                                    >  1:193280/1‑68

                                                                                                     CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTC                                                                                                    <  2:193280/68‑1

                                                                                                       ACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACT                                                                                                               <  1:561522/55‑1

                                                                                                         GATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTT                                                                                                                           >  2:487236/1‑41

                                                                                                                 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTA                                                                                                              <  2:685862/46‑1

                                                                                                                   AACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAA                                                                                                  <  1:87581/56‑1

                                                                                                                   AACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAA                                                                                                  >  2:87581/1‑56

                                                                                                                       tTTCCTCTTATTATTTCACGTGATTTTCGCTCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGC          <  2:692593/139‑1

                                                                                                                           CTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG                                                                           >  2:442792/1‑71

                                                                                                                               tATTCTTTCACGTGTTTTGCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTAC  <  2:371636/139‑1

                                                                                                                                     TTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTC                                                                                        >  1:603819/1‑48

TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/52633‑52495

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTAC  <  CP000730/52988‑52862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.