New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 52495 =62 (0.990)111 (1.780)
+T		 3/256 NT 63.3% intergenic (+105/‑568) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator
?CP000730 = 52988 68 (1.080)intergenic (+598/‑75) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator

Only 100 of 192 total aligned reads displayed.

TGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAA  >  CP000730/52356‑52633
                                                                                                                                           |                                                                                                                                          
tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTGGTGGATATAATTAAAATTAATTAATAATAAACCAGAATAATGAAGTCTTAATCGTTCTGAAATACGAAAAATATTGTGGAAATcgc                                                                                                                                            >  1:21746/1‑140 (MQ=255)
  ttttttAAAGTATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGt                                                                                                                                          <  1:259224/140‑1 (MQ=255)
  ttttttAAAGCATTAGATGACTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGt                                                                                                                                          <  2:610530/140‑1 (MQ=255)
   tttttAAAGGATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTg                                                                                                                                         <  2:114659/140‑1 (MQ=255)
     tttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGGGGAAATCGCGTGaa                                                                                                                                       >  1:628405/1‑140 (MQ=255)
           gtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgcaaaacaCGTGaaagaata                                                                                                                                 <  2:371636‑M1/12‑2 (MQ=255)
               tAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag                                                                                                                             <  2:592689/140‑1 (MQ=255)
                 gATGCCTTAAAGAAATAGTTTTTCACTGAAAATCTTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGCGGAAATCGCGTGAAATAATCAGAGGa                                                                                                                           >  2:657999/1‑140 (MQ=255)
                 gATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATGAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGa                                                                                                                           >  1:484568/1‑140 (MQ=255)
                     ccTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCg                                                                                                                       >  1:512863/1‑140 (MQ=255)
                       ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                                     <  2:321709/140‑1 (MQ=255)
                        tAAAGAAATAGTTTTTCAATGAAAATATTTATAGATATAATTAAAATTTATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGttt                                                                                                                    <  1:242704/140‑1 (MQ=255)
                          aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGa                                                                                                                  >  2:479664/1‑140 (MQ=255)
                          aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAACAGAGGAAACGTTTGa                                                                                                                  >  1:609531/1‑140 (MQ=255)
                          aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCACGTGAAATAATCAGAGGAATCGTTTGa                                                                                                                  >  2:300958/1‑140 (MQ=255)
                                   tttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTCATACAGGACAATGTAGTCTTAATCGACAACAAAGACTAAAAACGTAGGTGAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                                                                         >  2:696977/1‑140 (MQ=21)
                                   tttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                                                                         >  1:283441/1‑140 (MQ=255)
                                   tttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                                                                         >  2:556871/1‑140 (MQ=255)
                                            gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc                                                                                                >  1:659072/1‑140 (MQ=255)
                                               aaaaattATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                                                                             <  2:198434/135‑1 (MQ=255)
                                                 tatTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa                                                                                           >  1:293617/1‑140 (MQ=255)
                                                  atTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATTCGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa                                                                                          <  2:437988/140‑1 (MQ=255)
                                                   tttcaaatcatagtattaatcgctttaaaatcgcttgaaataatcagagcaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCCTGAAATAATCAGAGTAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                                                                         >  1:44985‑M1/89‑140 (MQ=255)
                                                                              tatTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATTGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt                                                              <  1:685063/140‑1 (MQ=255)
                                                                               aatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt                                                             >  1:86490‑M1/61‑140 (MQ=255)
                                                                               aatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGAGAAAATCACGTGAAATAATCAGAGGAATCGttt                                                             >  1:674646‑M1/61‑140 (MQ=255)
                                                                                ttAAGCCAGGATAATGTAGGCTTAAGTGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTCAAATAATCAGAGGAATCGTTTGAAACCATCGTAGTAATCGCGCGAACATCACGTGAAATAATCAGAGGAATCGTTTg                                                            <  2:544101/140‑1 (MQ=21)
                                                                                     gtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                                                                        <  2:73586‑M1/53‑1 (MQ=255)
                                                                                     gtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAaata                                                       <  2:624536‑M1/86‑2 (MQ=255)
                                                                                       gaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcat                                                     >  1:426060‑M1/53‑140 (MQ=255)
                                                                                        ggATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGGAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcatc                                                    >  1:490001/1‑140 (MQ=255)
                                                                                        aaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                               <  1:550226‑M1/46‑1 (MQ=255)
                                                                                         gATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCg                                                   >  2:86490/1‑140 (MQ=255)
                                                                                         gATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAAAAATCAAAGGAATCAATAGAAAACATCg                                                   >  1:229356/1‑140 (MQ=21)
                                                                                           tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGAAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAAGCAGAGGAATCGTTTGAAATCATCgta                                                 >  1:232509/1‑140 (MQ=255)
                                                                                            aatcagaggaatcgtttgaaatcatcgtaataatcgggcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                >  2:490001‑M1/48‑140 (MQ=255)
                                                                                            aaTGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGCAAATCACGTGAAATAATCAGAGGAATGGATTGAAATCACAgtag                                                >  2:606417/1‑140 (MQ=21)
                                                                                             aTGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTATCCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtaat                                               >  1:563769/1‑138 (MQ=255)
                                                                                               cagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATTATCGTAGTAATCGCGCGaa                                                                                           >  1:387777‑M1/45‑94 (MQ=255)
                                                                                               cagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa                                                                                           <  2:387777‑M1/50‑1 (MQ=255)
                                                                                                 gaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGaa                                                                                                                                       >  1:603819‑M1/43‑48 (MQ=255)
                                                                                                  aggaaccgtttcaaatcatcgaagtaatcgcgcgtaaatcaCGTGAAATAGTCAGAGGAATCGTTGGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcg                                          >  1:305739‑M1/42‑140 (MQ=255)
                                                                                                   ggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAtcgt                                         <  1:152182‑M1/100‑2 (MQ=255)
                                                                                                   ggaaacgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc                                         >  1:472729‑M1/41‑140 (MQ=255)
                                                                                                   gcTTAATCGTACTGAAATAAGAAAAATTTTGTGGAAAGCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc                                         <  2:21746/139‑1 (MQ=255)
                                                                                                    gaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATAAGAGGAATCGTTTGAGATAATAGAAGTAATcgcg                                        <  2:675758‑M1/101‑1 (MQ=255)
                                                                                                    gaaatgtttgaaaacatcgtagaaatcgagagaaaatcaCGTGGAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                        >  2:484568‑M1/40‑140 (MQ=255)
                                                                                                     aatcgtttgaaatcatcgtagtaatagcgagaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCCTCGTAGTAATcgcgc                                       <  1:352119‑M1/102‑1 (MQ=255)
                                                                                                      atcgtttgacatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                      <  1:532891‑M1/103‑1 (MQ=255)
                                                                                                      atcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                                                                         <  1:578284‑M1/52‑1 (MQ=255)
                                                                                                      atcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                                                                       <  1:639549‑M1/54‑1 (MQ=255)
                                                                                                      atcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                      <  1:636421‑M1/103‑1 (MQ=255)
                                                                                                      atcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                      >  2:642240‑M1/38‑140 (MQ=255)
                                                                                                      atcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCCTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAAGAATCGCTTGAAAGCAACGTAGTAATcgcgcg                                      <  1:439904‑M1/103‑1 (MQ=255)
                                                                                                       tcgtttgaaatcatggtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAGCGCGCGAAAATCTCGTGAAATAATAAGAGGAATCGTTTGAAAACATCGTTGTAATAGAGCGa                                     <  2:497510‑M1/104‑1 (MQ=255)
                                                                                                        cgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcg                                                                                                 <  1:141804‑M1/44‑1 (MQ=255)
                                                                                                         gtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCAGCGTAGTAATCGAGCGGAAGTCATGGGAAGTAAGCAGAGGAATCGTTTGAAATAATAGTAgtaatcgcggggaa                                   <  2:565282‑M1/106‑6 (MQ=255)
                                                                                                          tttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataa                                                                            <  1:191428‑M1/65‑1 (MQ=255)
                                                                                                          tttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCgaaag                                  <  2:349482‑M1/107‑2 (MQ=255)
                                                                                                          tttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                  <  1:277201‑M1/107‑1 (MQ=255)
                                                                                                           ttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATGATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTGGAAATCATCGTAGTAATAGCGCGAAAAt                                 <  2:472318‑M1/108‑1 (MQ=255)
                                                                                                           ttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGtt                                                                                                                     <  1:87581‑M1/24‑1 (MQ=255)
                                                                                                            ttcaaatctagtaataattgagccaaaatcaGGTGAAATAATCAGAGGAATCGTTCGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                >  2:421730‑M1/32‑140 (MQ=255)
                                                                                                            ttaaatcaccctaataatctcccgaaaatcaCGTAAAATAATGCGAGCAATCCTTTGAAATCATCGTAGAAATCTCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                >  2:232509‑M1/32‑140 (MQ=255)
                                                                                                              aaatcatcgtagtaatcgcgcgaaaatcaCGTTAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGAGAAATAATCAGAGGAATCGTTTGAAATCATAGTAGTAATCGCGCGAAAAGCAc                              <  1:123‑M1/111‑1 (MQ=255)
                                                                                                                gAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                            >  2:272049/1‑140 (MQ=255)
                                                                                                                atcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATAAGAGGAATCGTTTGAAATCATCGTAGTAATGGCTCGAAAATCACGt                            <  2:615341‑M1/113‑1 (MQ=255)
                                                                                                                  aaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa                          >  2:249943/1‑140 (MQ=255)
                                                                                                                   atcgtagtaatcgagtgaaaatcaTGTGAAATATTTTGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGCGAAATTATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                         >  1:605412‑M1/25‑140 (MQ=255)
                                                                                                                    tcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt                                                             >  1:4645‑M1/24‑103 (MQ=255)
                                                                                                                    tcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt                                                             <  2:4645‑M1/80‑1 (MQ=255)
                                                                                                                     aCGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGAAATCTCGCGAAAAACACGCGAaat                       >  1:49723/1‑140 (MQ=255)
                                                                                                                       tagtaatcgcgcgaaagtcaCGTGAAATAATCAGAGGACTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAAGCATCGTAGTAATAGCGCGAAAATCACGTGAaataa                     <  1:404987‑M1/120‑1 (MQ=255)
                                                                                                                        agtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                                                                         <  1:561522‑M1/36‑1 (MQ=255)
                                                                                                                        agtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                  >  2:69197‑M1/20‑110 (MQ=255)
                                                                                                                         gtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                                                                            >  2:368542‑M1/19‑67 (MQ=255)
                                                                                                                         gtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                                                                            <  1:368542‑M1/49‑1 (MQ=255)
                                                                                                                         gaaatcgagcgaaaatcaCGTGAAATACTCAAAGGAATCGTGTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                   >  2:413836‑M1/19‑140 (MQ=255)
                                                                                                                            atcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCCTCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGACTCGTTTTAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga                <  1:107201‑M1/125‑1 (MQ=255)
                                                                                                                            atcgcgcgaaaataaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga                >  1:699271‑M1/16‑140 (MQ=255)
                                                                                                                            atcacgcgaaaatcaCGTGAAATAAACTTTAGAAACTTTTAAAATCATCGTAGAAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga                >  1:95573‑M1/16‑140 (MQ=255)
                                                                                                                               ttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGa             >  1:178618/1‑140 (MQ=38)
                                                                                                                               gcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                                                                         >  1:615101‑M1/13‑64 (MQ=255)
                                                                                                                               gcgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                                                                         <  2:615101‑M1/52‑1 (MQ=255)
                                                                                                                                tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGGAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa            >  1:566556/1‑140 (MQ=37)
                                                                                                                                cgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                                                                                    <  2:119663‑M1/41‑1 (MQ=255)
                                                                                                                                cgcgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                                                                                    >  1:119663‑M1/12‑52 (MQ=255)
                                                                                                                                  cgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag                                                                      <  2:88338‑M1/71‑1 (MQ=255)
                                                                                                                                  cgaaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATAATCGTAGTAATCGCGCGAAAATAGCGTGAAATAATAAGAGGAATCGTTTGAAATCATCGTAGTAATAGCGCGAAAATCACGTGAAAGAATCAGAGGAatg          <  2:662318‑M1/131‑2 (MQ=255)
                                                                                                                                   gaaactcaCGTGAAATAATCAGAGGATTCGTTTTATATTATCGTAGTATTCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCg         >  1:421187‑M1/9‑140 (MQ=255)
                                                                                                                                   aaaaatcaCGTGAAATAATCAGAGAAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCg         >  1:692481‑M1/9‑140 (MQ=255)
                                                                                                                                   aaaaataaCGTGAAATAATCAGAGGAAACGTTTGAAATTAGAGTAAAAATCGAGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAAGCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCg         >  2:286635‑M1/9‑140 (MQ=255)
                                                                                                                                    aaaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc                                       >  2:570668‑M1/8‑109 (MQ=255)
                                                                                                                                     aaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa                                    <  2:400583‑M1/105‑1 (MQ=255)
                                                                                                                                     aaatcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATAAGTGGAATCGtt       <  2:427317‑M1/134‑1 (MQ=255)
                                                                                                                                      aatcaGGTGAAATAATTAGAGGAAAAGTTTGAAAACATCGTAAGAATCGCGCAAAAATCACGTGAAATAATCAGAGGAATCGTTTGAACTCATCGTATTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt      >  2:512863‑M1/6‑140 (MQ=255)
                                                                                                                                       atcaCGTGAAATAATCAGAGGAATCTTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg     >  1:336271‑M1/5‑140 (MQ=255)
                                                                                                                                       atcaCGTGAAATAATCAGAGGAATCGTTTGAAATAATCGAAATAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg     >  2:14588‑M1/5‑140 (MQ=255)
                                                                                                                                       atcaCGTGAAATAATCAATAGAAACATTTGAATTCACCCTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCAGCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg     >  1:657999‑M1/5‑140 (MQ=255)
                                                                                                                                        tcaCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGGAGTAATCGCGCGAAAATCAAGTGAAATAATCAGAGGAATCGTTTGAAATCATCGGAGTAATCGCGCGAAAAACACGTGAAAAAATAAGAGGAAtcgttgga    <  2:81283‑M1/137‑4 (MQ=255)
                                                                                                                                           |                                                                                                                                          
TGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAA  >  CP000730/52356‑52633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.