New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 512620 =84 (1.330)47 (1.090)
+TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA
34/178 NT 44.9% intergenic (+688/‑173) recR/rrs1 recombination protein RecR/16S ribosomal RNA
?CP000730 1998278 = NA (NA)intergenic (‑6/+5) USA300HOU_t0050/rrf4 tRNA‑Val/5S ribosomal RNA

Only 100 of 101 total aligned reads displayed.

ATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATA  >  CP000730/1998142‑1998417
                                                                                                                                        |                                                                                                                                            
aTTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTaaaa                                                                                                                                           <  1:704734/140‑1 (MQ=38)
      agacAGTTGCCCTACGCATGGGGCCAGGCCGGCCATATGTTACAACAAATTGTGTCGAAGGACGGGTTCGAACCGCGGACCCTCTGCGTGTAAGGCAGGTGCTCTCCCAGCTGAGCTAATTCTCCGATTTAACACGGccg                                                                                                                                     <  2:39320/137‑2 (MQ=2)
      aGTCAGTTGCTCTTCCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCt                                                                                                                                     <  2:39321/140‑1 (MQ=255)
      aGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCt                                                                                                                                     <  2:39324/140‑1 (MQ=255)
        tCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTgg                                                                                                                                   <  1:23225/140‑1 (MQ=255)
        tCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTgg                                                                                                                                   >  1:530724/1‑140 (MQ=255)
        tCAGTTGCTCTACCAATTGAGCTAAGCCGGCAATATGTAAGAATAAATGGTGGAGAATTACTGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTgg                                                                                                                                   >  1:530986/1‑140 (MQ=255)
          aGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGCCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATGCTCCGATTTAAAACTGCCTGGCa                                                                                                                                 >  2:544038/1‑140 (MQ=255)
          aGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCa                                                                                                                                 >  1:338119/1‑140 (MQ=255)
          aGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCGGGCa                                                                                                                                 >  1:437894/1‑140 (MQ=255)
            ttGCTCTACCAATTGGGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                               <  2:47699/140‑1 (MQ=255)
            ttGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                               <  1:88046/140‑1 (MQ=255)
              gCTCTACCAATTGAGCTAGGCCGGCGATATGTAAGAATAAATGGTGTAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAAATGCCTGGCAACGt                                                                                                                             >  1:319511/1‑140 (MQ=255)
              gCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGCATGCCGGGTTCGAACCGCCGACCCTCTGCTTGTTAGGGATAAACTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGt                                                                                                                             >  1:563787/1‑140 (MQ=17)
                tctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTc                                                                                                                           <  1:13687/140‑1 (MQ=255)
                 ctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCt                                                                                                                          >  1:711524/1‑140 (MQ=255)
                  tACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCTAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAGTTCTCCGATTTAAAACTGCCTGGCAACGTTCTa                                                                                                                         <  2:480066/140‑1 (MQ=255)
                   aCCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTGAGGCTGCCTGGCAACGTTCTAc                                                                                                                        >  2:727634/1‑140 (MQ=255)
                            gCTAGGCCGGCAATATGTTAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGTCTGGCAACGTTCTACTCTAGCGGa                                                                                                               <  1:463156/140‑1 (MQ=255)
                               gggctagcggtttGTAAGAAAAAGTGGTGGAGAGTGACGGGTTCGAACCGCCGCCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                            <  2:47255/128‑1 (MQ=17)
                               aGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCACCGTTCTACTCTAGCGGAACg                                                                                                            >  2:354002/1‑140 (MQ=255)
                                    ggCAATATGTAAGAATAAATGGTGGCGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGt                                                                                                       <  1:391809/140‑1 (MQ=255)
                                     gCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGtt                                                                                                      >  2:123091/1‑140 (MQ=255)
                                     gCAATATGCACGAATAAATGGAGGAAAACGACGGGTTCGAACCGCCGACCCTCTGCTTGAAAGGCAGAGGCTCCCCCACCTGAACTACTGCTCCGATTAAAAACTGCCTGGCAACGTTCTTCTCTACAGGGACGTatgat                                                                                                      >  2:148624/1‑136 (MQ=12)
                                      cAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGtta                                                                                                     >  2:71969/1‑139 (MQ=255)
                                         tatGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAACTAATTATCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGAc                                                                                                  >  1:111411/1‑140 (MQ=255)
                                          atGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGAATTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACt                                                                                                 >  1:58439/1‑140 (MQ=255)
                                           tGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTa                                                                                                >  1:654653/1‑140 (MQ=255)
                                            gTAAGAATAAATGGTGGAGAATGCCGGGTTCGAACCGCCGACCCTCCGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                               <  2:19796/140‑1 (MQ=255)
                                             tAAGAATAAATGGCGGAGAATGACCGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCCGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                              <  2:330014/140‑1 (MQ=255)
                                                 aaTACAGGGTGGACAATGACGGGTTGGACCCGCCGACCCGTTGCTTGTAGGGCAGCTGCTCTCCCAGCTGAGCGTATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCTGAACGTAAGTTCGACTACCATCg                                                                                          <  2:3833/140‑1 (MQ=14)
                                                    aaaTGGTGGAGAATGACGGGTTCTAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACg                                                                                       <  2:394708/140‑1 (MQ=255)
                                                    aaaTGGTGGAGAATGACGGGTTCGAACCTCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCCACg                                                                                       >  2:425573/1‑140 (MQ=255)
                                                    aaaTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACg                                                                                       >  2:674638/1‑140 (MQ=255)
                                                        ggtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGGAAGTTCGACTACCATCGACGCTaa                                                                                   >  2:550576/1‑140 (MQ=255)
                                                          tggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAgg                                                                                 >  1:294465/1‑140 (MQ=255)
                                                          tggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAgg                                                                                 >  1:4764/1‑140 (MQ=255)
                                                              gaATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCt                                                                             <  1:33481/140‑1 (MQ=255)
                                                                aTGCCGGGTTCGAACCGCCGGCCCTCTGCTTGTAAGCCGGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTa                                                                           <  2:13198/140‑1 (MQ=255)
                                                                   ccGGGTCCGAGCCGCCCGCCCTCTGCTTGTAAGGCAGACGCTCTCCCAGCTCTGCTAATTCGCCGATTTAAAACTTCGTGGCAACGTTCTCCTCTGTCGGAACGTAAGGTCGACTACCTTCGTCGCTGAGGGGCTTAACt                                                                        <  2:4820/139‑1 (MQ=9)
                                                                   accggTTCTAGCCGCCCACCCTCTGTTTTCAAGTCAGTTGCTCTCCTAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTGCTACTCGAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACt                                                                        <  1:215551/137‑1 (MQ=14)
                                                                   aCGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTACCTGGCAACGTTCTACTCTAGCGTAACGTAAGTACGACTACCATACACCCTAAGGAGCTaaagt                                                                        >  2:539486/1‑138 (MQ=14)
                                                                        ttCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCtgt                                                                   <  2:654653/140‑1 (MQ=255)
                                                                        ttCCAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCGCCCAGCTGCGTTAATCCTCCGATTTAAAACTGCCTGGCCACGTTCTACTCTATCGGAACGTAAGTTCGACTACCATCGCCGCTAAGGAGCTTAACTTCtgt                                                                   <  2:343202/140‑1 (MQ=14)
                                                                         tCGAACCGCCCACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTCCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCtgtg                                                                  <  1:302843/140‑1 (MQ=255)
                                                                             aCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCAACGCTAAGGAGCTTAACTTCTGTGTTCg                                                              >  1:296551/1‑140 (MQ=255)
                                                                               ctccgACCCTCTGCTTGTAAGGCAGATGCCCTCCCAGCTGAGCTAATTCTTCGATATAAAACTGCCTTGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGCCGCTAAGGAGCTTAACTTCTGTGTTCGGc                                                           <  1:29307/138‑1 (MQ=14)
                                                                                  cgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTTAGCTAATTCTCCTATTTAAAACTGCCTGGCAACGTTCTAATCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATg                                                        <  1:210209/140‑1 (MQ=255)
                                                                                  cgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATg                                                        <  1:653646/140‑1 (MQ=255)
                                                                                     cccTCTGCTTGTAAGACAGCTGCTCTCCCAGCTGAGCTAATTATCCGATTTAAAACTGCCTGGCAACGTTCTGCACTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGa                                                     >  1:542577/1‑140 (MQ=17)
                                                                                      ccTCTGTTTGTAAGGTAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGaa                                                    <  1:79863/140‑1 (MQ=255)
                                                                                      ccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGaa                                                    <  1:547216/140‑1 (MQ=255)
                                                                                      ccTCTGCTTGGAAGGCAGATGCTTTCCCACCTGAGCTAATTCTCCGATTTAAAACTGCCTGGAAACGTTTTACTCTAGTGGAACGTAAGTTCGACTGCCATCGAGGCTAAGGAGCTTAACGTCTGTGTTCGGCATGGGaa                                                    <  1:571355/140‑1 (MQ=14)
                                                                                        tctGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTACCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACa                                                  >  1:244317/1‑140 (MQ=255)
                                                                                               gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGa                                           >  2:410210/1‑140 (MQ=255)
                                                                                                tAAGGCAGATTCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                          <  1:66008/140‑1 (MQ=255)
                                                                                                tAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                          <  2:33547/140‑1 (MQ=255)
                                                                                                tAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                          <  1:665774/140‑1 (MQ=255)
                                                                                                tAAGGCAGATGCCCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACTTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCCGTGTTCGGCATGGGAACAGGTGTGAc                                          <  2:437290/140‑1 (MQ=255)
                                                                                                 aaGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCCACGTTCTACTCTAGCGGAACGTAAATTCGACTACAATCGACGATAAGGAGCGTAACTTCTGTGTTAGGCATGGGAACAGGTGTGAcc                                         >  1:198751/1‑140 (MQ=14)
                                                                                                 aaGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcc                                         <  2:711524/140‑1 (MQ=255)
                                                                                                  aGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcct                                        >  1:692254/1‑140 (MQ=255)
                                                                                                     cAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGCACGTAAGTTCGACTACCATCGACGATAAAGAGCTTAACTTCTGTATTCGGCATGGGAACAGGTGTGAcctcct                                     >  1:31558/1‑140 (MQ=255)
                                                                                                        actctctCCCAGCTTAGCTAATTCTCCGATTAAAAACTGCCCGGAAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGc                                  <  1:248995/137‑1 (MQ=14)
                                                                                                        aTGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGc                                  <  1:123091/140‑1 (MQ=255)
                                                                                                        aTGCTCCTCCAGCTGAGGTAATTCTCGGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGTTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGc                                  <  1:148624/140‑1 (MQ=14)
                                                                                                        aTGCTCCCCCAGCGGGTCTAAACATCCGATTTAAAACCGCCTGGCAACGTTCTACTCTAGCGGACCCTAAGTTCGACCACCTTCGACGCCAAGGAGCTTAACGTCTGGGTTCGGCATGGGACCAGCTGTGACCTCCTTGc                                  <  2:193344/140‑1 (MQ=14)
                                                                                                         tGCTCTCCCATCTGAGCTAATTCTCCGATTTAAAACTGCCTGGAAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCt                                 <  1:154089/140‑1 (MQ=255)
                                                                                                         tGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCt                                 >  1:681262/1‑140 (MQ=255)
                                                                                                           ctctCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtat                               <  2:321547/140‑1 (MQ=255)
                                                                                                           ctctCCCACTTGCTCTAATTCTCCGATTTAAAACTGTCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtat                               <  1:252374/140‑1 (MQ=14)
                                                                                                            tctctcAGCTTCGCTAATTCTCCGATTTCAAACTGCCTCGCCACCTTCTTCTCTTGGGGAACGTAAGTTCGACTACCCTCCACGCTAAGGAGCTTAACTTTTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtata                              <  2:310891/140‑1 (MQ=14)
                                                                                                            tctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGGGTTCGGCATGGGAACAGGTGTGAGCTCCTTGCtata                              >  2:192002/1‑140 (MQ=255)
                                                                                                            tctcCCAGCCGAGCTAATTCTCCTATTTAAAACTGGCTGGCAACGTTATACTCTAGCGGAACGTAAGTTGGACAACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGTATGGGAACAGGTGTGACCTCCTTGCtata                              <  1:124860/140‑1 (MQ=14)
                                                                                                             cttccAGCTGAGCCAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACCACCATCGGCGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                             <  2:487484/137‑1 (MQ=255)
                                                                                                              tcCCAGCTGAGCTAATTCTCCGATTTGAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGt                            >  2:450603/1‑140 (MQ=255)
                                                                                                              tcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGt                            <  1:64305/140‑1 (MQ=255)
                                                                                                               cccGGCTGAGCTAATTCTCCGATTTAAAACTGACTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTc                           <  2:406370/140‑1 (MQ=255)
                                                                                                               cccAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTGAATTGTTGTTTGTTCTTGGGAACAGGTGTGACCTCCTTGCTATAGTc                           >  1:560584/1‑140 (MQ=17)
                                                                                                                    cTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGAGTGACCTCCTGGCTATACTCACCAg                      >  2:157376/1‑140 (MQ=255)
                                                                                                                     tGAGCTAATTCTCCGATTTAAAACTGACTGGTACCTTTTTACTTTGGTGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGa                     <  1:17158/140‑1 (MQ=14)
                                                                                                                      gAGCTGATTCTCCGATTGAAAACTGCCTGGCAACGTTCTACTCTCTCGGATCTTAAGGTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGGATGGGAACAGGTGTGACTTCCTTGCTATAGTCACCAGAc                    <  2:24546/140‑1 (MQ=14)
                                                                                                                       tgCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAATGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACa                   <  1:142526/139‑1 (MQ=255)
                                                                                                                       aGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGTCATGGGAACAGGAGTGACCTCCTTGCAATAGTCACCAGACa                   >  1:266756/1‑140 (MQ=255)
                                                                                                                       aGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGCCa                   >  1:678310/1‑140 (MQ=255)
                                                                                                                       aGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACa                   >  1:197082/1‑140 (MQ=255)
                                                                                                                       aGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACa                   <  2:482765/140‑1 (MQ=255)
                                                                                                                       aGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACa                   >  2:35789/1‑140 (MQ=255)
                                                                                                                       aGCTAATTCTCCGACTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACa                   >  1:397526/1‑140 (MQ=255)
                                                                                                                        gCTAAGTGTCCGAGTTAAAACGGCCTCGCAACGTTCTACTCTAGCGGAACGCAAGTTCGACTACCCTCGACGCTAAGGGTCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACat                  <  2:242144/140‑1 (MQ=11)
                                                                                                                         cTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACata                 >  2:687630/1‑140 (MQ=255)
                                                                                                                           aaTTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATg               <  2:530986/140‑1 (MQ=255)
                                                                                                                           aaTTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATg               <  2:530724/140‑1 (MQ=255)
                                                                                                                             ttCTCCGATTTAAAACCGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGaa             <  1:727634/140‑1 (MQ=255)
                                                                                                                              tctcCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAAt            >  2:565075/1‑140 (MQ=255)
                                                                                                                                       tAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTATGGGGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTACTTGCTATAGTCACCAGACATATTAATGAAAATtat   >  1:284451/1‑140 (MQ=11)
                                                                                                                                        aaaaCTGCCTGGTAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACTATCGACGCTAAGGATCTTAACTTCTTTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTtata  <  1:71969/140‑1 (MQ=255)
                                                                                                                                        aaaaCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTtata  <  1:354002/140‑1 (MQ=33)
                                                                                                                                        aaaaCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTtata  <  1:425427/140‑1 (MQ=33)
                                                                                                                                        aaaaCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTAAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTAGCTATAGTCACCAGACATATGAATGTAATTtata  >  1:288386/1‑140 (MQ=18)
                                                                                                                                        |                                                                                                                                            
ATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATA  >  CP000730/1998142‑1998417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.