New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 329202 =34 (0.990)4 (0.130) 4/258 4.8 10.9% intergenic (+70/+73) USA300HOU_0295/USA300HOU_0296 hypothetical membrane protein/hypothetical protein
?CP000730 329255 = 34 (1.070)intergenic (+123/+20) USA300HOU_0295/USA300HOU_0296 hypothetical membrane protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTGGATTGGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/329351‑329202
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtcgctttTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAAC  >  CP000730/329255‑329388
                                                                                                                                                                                                                                                                                            
ACTGGATTGGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATT                                                                                                                                                 <  1:305037/141‑1
        GGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTT                                                                                                                                         <  1:81779/141‑1
         GTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACAAAAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTT                                                                                                                                        <  2:64283/141‑1
                                                    TTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTAGTAACACTGCAAAATTGGTCGCTTTTTATTAATGTCATGATTAATTTAATGGATGTAATTATATGATG                                                                                             >  2:113429/1‑141
                                                                                             ATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATAT                                                    >  2:64306/1‑141
                                                                                                                    TTACAATTCGTAACACTGC‑GAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCGGAAGCAGAGATGGGTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAA                            >  2:276077/1‑141
                                                                                                                               AACACTGCAAAATTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATAC                  >  1:41948/1‑141
                                                                                                                                             GGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTA    <  1:113429/141‑1
                                                                                                                                             GGTCGCTTTTTATTGATGACATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTAGATGAAACGATATATTCACCGATCGAGTTCATCTCTGCAATTAGAATACTTGCATAAATATTA    <  2:177390/141‑1
                                                                                                                                               TCGCTTTTTATTGATGTCATTATTAATTTAAGGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAAC  <  1:352314/141‑1
                                                                                                                                               TCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAAC  <  1:195383/141‑1
                                                                                                                                                                                                                                                                                            
ACTGGATTGGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/329351‑329202
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtcgctttTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAAC  >  CP000730/329255‑329388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.