| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP000730 | 1,302,967 | Δ4 bp | coding (325‑328/714 nt) | USA300HOU_1209 → | possible GntR family transcriptional regulator |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP000730 | 1302967 | 1302970 | 4 | 22 [0] | [0] 22 | USA300HOU_1209 | possible GntR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1302966 | 0 (0.000) | 22 (0.650) | 22/276 | 0.8 | 100% | coding (324/714 nt) | USA300HOU_1209 | possible GntR family transcriptional regulator |
| ? | CP000730 | 1302971 = | 0 (0.000) | coding (329/714 nt) | USA300HOU_1209 | possible GntR family transcriptional regulator | |||||
TGTTAAGTCACTGCCCCCTTTCTTTTATCCATTGAATGAACTTATAAGTATTGGGCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAACTATGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTAAAAAAGAATTAACATGTACAGAGTA > CP000730/1302846‑1303106 | caagtgttaagtcactgccccctttcttttatccattgaatgaacttataagtattgggcaaatgattaaaaatgcaggatttgaatgcggaactgaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAAttt < 1:121586‑M2/16‑1 (MQ=255) ttaagtcactgccccctttcttttatccattgaatgaacttataagtattgggcaaatgattaaaaatgcaggatttgaatgcggaactgaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAg > 1:61057‑M2/120‑141 (MQ=255) taagtcactgccccctttcttttatccattgaatgaacttataagtattgggcaaatgattaaaaatgcaggatttgaatgcggaactgaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGc < 1:116855‑M2/23‑1 (MQ=255) tgccccctttcttttatccattgaatgaacttataagtattgggcaaatgattaaaaatgcaggatttgaatgcggaactgaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTgaaga > 1:122102‑M2/111‑141 (MQ=255) tccattgaatgaacttataagtattgggcaaatgattaaaaatgcaggatttgaatgcggaactgaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAAcc < 2:72319‑M2/47‑1 (MQ=255) tgggcaaatgattaaaaatgcaggatttgaatgcggaactgaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGcc > 1:223894‑M2/71‑141 (MQ=255) gggcaaatgattaaaaatgcaggatttgaatgcggaactgaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCg < 2:114637‑M2/72‑1 (MQ=255) gcaaatgattaaaaatgcaggatttgaatgcggaactgaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGAt > 2:92226‑M2/68‑141 (MQ=255) atgcaggatttgaatgcggaactgaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGgtcgt < 1:175554‑M2/88‑1 (MQ=255) tttgaatgcgtaactgaatacttaaattttgatgatcaaccatcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTCTGACCTGCCGATTTAGAACCGGTCGTCTATTGtt < 2:183571‑M2/96‑1 (MQ=255) gaatgcggaactgaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAg > 2:319496‑M2/43‑141 (MQ=255) atgcggaactgaatacttaaattttgatgagcaaccagcaTGTTAGCTGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGAt > 1:307540‑M2/41‑141 (MQ=255) gcggaactgaatacttaaattttgatgatcaaccagcaTGTTAGATGCAAAGTTGTTGAACGTTGAAGAAGGATATTCAGTAACCATTATAGAACGATTACGAACTTCCGATGGAGAACCGGTCGTCTATTGTTTAGATaa > 1:35896‑M2/39‑141 (MQ=255) aactgaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAAtt < 1:173726‑M2/107‑1 (MQ=255) gaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTa > 1:36627‑M2/31‑141 (MQ=255) gaatacttaaattttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTa < 2:241437‑M2/111‑1 (MQ=255) attttgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTAAAAAAGAAtt > 1:60536‑M2/21‑141 (MQ=255) ttatgatgagcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTAAAAAAGAATTa < 2:317613‑M2/122‑1 (MQ=255) atgaccaaccagcaTGTTAGATGCAAATTTGTTGAGCGTCGAAAAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACAGGTCGTCTATTGTTTATATAAAATTGCTAAAAAAGAATTAACATg < 2:170886‑M2/127‑1 (MQ=255) gcaaccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTAAAAAAGAATTAACATGTACa > 2:52416‑M2/11‑141 (MQ=255) ccagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTAAAAAAGAATTAACATGTACAGAGt < 1:266738‑M2/135‑1 (MQ=255) cagcaTGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTAAAAAAGAATTAACATGTACAGAGTa > 1:36331‑M2/6‑141 (MQ=255) | TGTTAAGTCACTGCCCCCTTTCTTTTATCCATTGAATGAACTTATAAGTATTGGGCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAACTATGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTAAAAAAGAATTAACATGTACAGAGTA > CP000730/1302846‑1303106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |