Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP000730 1,302,967 Δ4 bp coding (325‑328/714 nt) USA300HOU_1209 → possible GntR family transcriptional regulator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP000730 1302967 1302970 4 22 [0] [0] 22 USA300HOU_1209 possible GntR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 13029660 (0.000)22 (0.650) 22/276 0.8 100% coding (324/714 nt) USA300HOU_1209 possible GntR family transcriptional regulator
?CP000730 1302971 = 0 (0.000)coding (329/714 nt) USA300HOU_1209 possible GntR family transcriptional regulator

CAAGTGTTAAGTCACTGCCCCCTTTCTTTTATCCATTGAATGAACTTATAAGTATTGGGCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAACTATGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTAAAAAAGAATTAACATGTACAG  >  CP000730/1302842‑1303102
                                                                                                                            |                                                                                                                                        
caAGTGTTAAGTCACTGCCCCCTTTCTTTTATCCATTGAATGAACTTATAAGTATTGGGCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaattt                                                                                                                          <  1:121586‑M1/141‑17 (MQ=255)
      ttAAGTCACTGCCCCCTTTCTTTTATCCATTGAATGAACTTATAAGTATTGGGCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgag                                                                                                                    >  1:61057‑M1/1‑119 (MQ=255)
       tAAGTCACTGCCCCCTTTCTTTTATCCATTGAATGAACTTATAAGTATTGGGCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagc                                                                                                                   <  1:116855‑M1/141‑24 (MQ=255)
               tGCCCCCTTTCTTTTATCCATTGAATGAACTTATAAGTATTGGGCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagcgttgaaga                                                                                                           >  1:122102‑M1/1‑110 (MQ=255)
                               tCCATTGAATGAACTTATAAGTATTGGGCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaacc                                                                                           <  2:72319‑M1/141‑48 (MQ=255)
                                                       tGGGCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgcc                                                                   >  1:223894‑M1/1‑70 (MQ=255)
                                                        gggCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccg                                                                  <  2:114637‑M1/141‑73 (MQ=255)
                                                          gCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgat                                                                >  2:92226‑M1/1‑67 (MQ=255)
                                                                        aTGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgatggagaaccggtcgt                                                  <  1:175554‑M1/141‑89 (MQ=255)
                                                                                tttGAATGCGTAACTGAATACTTAAATTTTGATGATCAACCATCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattctgacctgccgatttagaaccggtcgtctattgtt                                          <  2:183571‑M1/141‑97 (MQ=255)
                                                                                   gAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgatggagaaccggtcgtctattgtttag                                       >  2:319496‑M1/1‑42 (MQ=255)
                                                                                     aTGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagctgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgatggagaaccggtcgtctattgtttagat                                     >  1:307540‑M1/1‑40 (MQ=255)
                                                                                       gCGGAACTGAATACTTAAATTTTGATGATCAACCAGCAtgttagatgcaaagttgttgaacgttgaagaaggatattcagtaaccattatagaacgattacgaacttccgatggagaaccggtcgtctattgtttagataa                                   >  1:35896‑M1/1‑38 (MQ=255)
                                                                                           aaCTGAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgatggagaaccggtcgtctattgtttagataaaatt                               <  1:173726‑M1/141‑108 (MQ=255)
                                                                                               gAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgatggagaaccggtcgtctattgtttagataaaattgcta                           >  1:36627‑M1/1‑30 (MQ=255)
                                                                                               gAATACTTAAATTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgatggagaaccggtcgtctattgtttagataaaattgcta                           <  2:241437‑M1/141‑112 (MQ=255)
                                                                                                         aTTTTGATGAGCAACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgatggagaaccggtcgtctattgtttagataaaattgctaaaaaagaatt                 >  1:60536‑M1/1‑20 (MQ=255)
                                                                                                          ttatgatgagcaACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgatggagaaccggtcgtctattgtttagataaaattgctaaaaaagaatta                <  2:317613‑M1/138‑123 (MQ=255)
                                                                                                               atgaCCAACCAGCAtgttagatgcaaatttgttgagcgtcgaaaaaggatatccagtaaccattatagaacgattacgaactgccgatggagaacaggtcgtctattgtttatataaaattgctaaaaaagaattaacatg           <  2:170886‑M1/141‑128 (MQ=255)
                                                                                                                   gCAACCAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgatggagaaccggtcgtctattgtttagataaaattgctaaaaaagaattaacatgtaca       >  2:52416‑M1/1‑10 (MQ=255)
                                                                                                                       ccAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgatggagaaccggtcgtctattgtttagataaaattgctaaaaaagaattaacatgtacagagt   <  1:266738‑M1/141‑136 (MQ=255)
                                                                                                                        cAGCAtgttagatgcaaatttgttgagcgttgaagaaggatatccagtaaccattatagaacgattacgaactgccgatggagaaccggtcgtctattgtttagataaaattgctaaaaaagaattaacatgtacagagta  >  1:36331‑M1/1‑5 (MQ=255)
                                                                                                                            |                                                                                                                                        
CAAGTGTTAAGTCACTGCCCCCTTTCTTTTATCCATTGAATGAACTTATAAGTATTGGGCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACCAGCAACTATGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCGATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTAAAAAAGAATTAACATGTACAG  >  CP000730/1302842‑1303102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: