New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1100713 =	54 (0.950)	4 (0.080)	3/238	NT	8.0%	intergenic (‑277/+53)	USA300HOU_1033/pdf1	hypothetical protein/formylmethionine deformylase
	?	CP000730	1100746 =	43 (0.830)					intergenic (‑310/+20)	USA300HOU_1033/pdf1	hypothetical protein/formylmethionine deformylase

AACATGAAATTGACCATTTAAATGGTGTAATGTTCTATGATCACATTGACAAAGATCACCCATTACAACCACATACAGATGCAGTAGAAGTTTAAAACACATTTTTCTAATTATCAAAGCTTAGGATA‑AATATGATGTCCTAAGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1100860‑1100713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctaagctttGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTAAATGGTCAATTTCATGTTGGAAAACAATTGCTGGATATCCT  >  CP000730/1100746‑1100883                                                                                                                                                                                                                                                                                                 AACATGAAATTGACCATTTAAATGGTGTAATGTTCTATGATCACATTGACAAAGATCACCCATTACAACCACATACAGATGCAGTAGAAGTTTAAAACACATTTTTCTAATTATCAAAGCTTAGGATA‑AATATGATGTCCT                                                                                                                                                   >  1:262923/1‑141      GAAATTGACCATTTAAATGGTGTAATGTTCTATGATCACATTGACAAAGATCACCCATTACAACCACATACAGATGCAGTAGAAGTTTAAAACACATTTTTCTAATTATCAAAGCTTAGGATA‑AATATGATGTCCTAAGCT                                                                                                                                              <  1:520158/141‑1       AAATTGACCATTTAAATGGTGTAATGTTCTATGATCACATTGACAAAGATCACCCATTACAACCACATACAGATGCAGTAGAAGTTTAAAACACATTTTTCTAATTATCAAAGCTTAGGATA‑AATATGATGTCCTAAGCTT                                                                                                                                             <  2:338658/141‑1                       TGGTGTAATGTTCTATGATCACATTGACAAAGATCACCCATTACAACCACATACAGATGCAGTAGAAGTTTAAAACACATTTTTCTAATTATCAAAGCTTAGGACATCATAT‑TTATCCTAAGCTTTGATAATTAGAAAAAT                                                                                                                             >  1:541602/1‑141                                                       ATCACCCATTACAACCACATACAGATGCAGTAGAAGTTTAAAACACATTTTTCTAATTATCAAAGCTTAGGACATCATAT‑TTATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGG                                                                                             <  2:541602/141‑1                                                                                                                           AGGATA‑AATATGATGTCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTAAATGGTCAATTTCATGTT                         >  1:464102/1‑141                                                                                                                           AGGATA‑AATATGATGTCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTAAATGGTCAATTTCATGTT                         >  1:464094/1‑141                                                                                                                                                AGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTAAATGGTCAATTTCATGTTGGAAAACAATTGCTGGATAT     <  1:91803/141‑1                                                                                                                                                   TTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGACCATTACACCATTTAAATGGTCAATTTCATGTTGGAAAACAATTGCTGGATATCCT  <  2:574102/141‑1                                                                                                                                                   TTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTAAATGGTCAATTTCATGTTGGAAAACAATTGCTGGATATCCT  <  2:218568/141‑1                                                                                                                                                   TTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCCGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTAAATGGTCAATTTCATGTTGGAAAACAATTGCTGGATATCCT  <  2:624837/141‑1                                                                                                                                                                                                                                                                                                 AACATGAAATTGACCATTTAAATGGTGTAATGTTCTATGATCACATTGACAAAGATCACCCATTACAACCACATACAGATGCAGTAGAAGTTTAAAACACATTTTTCTAATTATCAAAGCTTAGGATA‑AATATGATGTCCTAAGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1100860‑1100713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctaagctttGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTAAATGGTCAATTTCATGTTGGAAAACAATTGCTGGATATCCT  >  CP000730/1100746‑1100883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.