New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1100713 =	54 (0.950)	4 (0.080)	3/238	NT	8.0%	intergenic (‑277/+53)	USA300HOU_1033/pdf1	hypothetical protein/formylmethionine deformylase
	?	CP000730	1100746 =	43 (0.830)					intergenic (‑310/+20)	USA300HOU_1033/pdf1	hypothetical protein/formylmethionine deformylase

ATGTAGAGATTATAAATTAATGTTAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTAAATGGTCAAT  >  CP000730/1100574‑1100852                                                                                                                                            |                                                                                                                                             atGTAGAGATTATAAATTAATGTTAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGaaa                                                                                                                                             >  2:594865/1‑141 (MQ=255)  aggatatccagcaattgttttccaacatgaaattgaccatttaaatggtgtaatgttctatgatcacattgacaaagatcacccattacaaccacatacggatgcagtagaagtttaaaacacatttttctaattatcaaa                                                                                                                                            <  2:624837‑M1/3‑1 (MQ=255)  aggatatccagcaattgttttccaacatgaaattgaccatttaaatggtgtaatgttctatgatcacattgacaaagatcacccattacaaccacatacagatgcagtagaagtttaaaacacatttttctaattatcaaa                                                                                                                                            <  2:218568‑M1/3‑1 (MQ=255)  aggatatccagcaattgttttccaacatgaaattgaccatttaaatggtgtaatggtctatgatcacattgacaaagatcacccattacaaccacatacagatgcagtagaagtttaaaacacatttttctaattatcaaa                                                                                                                                            <  2:574102‑M1/3‑1 (MQ=255)   gTAGAGATTATAAATTAATGTTAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTGGTTTATTCGAAAAAGTTGTGAAAGGAAAAg                                                                                                                                           >  1:272840/1‑141 (MQ=255)     atatccagcaattgttttccaacatgaaattgaccatttaaatggtgtaatgttctatgatcacattgacaaagatcacccattacaaccacatacagatgcagtagaagtttaaaacacatttttctaattatcAAAGCt                                                                                                                                         <  1:91803‑M1/6‑1 (MQ=255)      gagaTTATAAATTAATGTTAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCtt                                                                                                                                        >  1:247051/1‑141 (MQ=255)        gaTTATAAATTAATGTTAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGATGTAAAAGGAAAAGCTTAg                                                                                                                                      >  2:342970/1‑141 (MQ=255)        gaTTATAAATTAATGTTAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAAGTTGAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAg                                                                                                                                      >  2:116930/1‑141 (MQ=255)            ataAATTAATGTTAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGGATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGAca                                                                                                                                  >  1:665271/1‑141 (MQ=255)              aaaTTAATGTTAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGAcatc                                                                                                                                >  1:274868/1‑141 (MQ=255)                atgaaTGTGAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACAGTAGTGTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGAcatcat                                                                                                                              <  1:294890/138‑1 (MQ=255)                 ttAATGTTAAGAAAGAATTAAAGGCTTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTCTATTCGAAAAAGTTGTAAAAGGAAAGACTTAGGACAGCata                                                                                                                             >  1:204428/1‑141 (MQ=255)                   aaTGTTAAGAAAGAATTAAAGGATCTTATATGAAACTGTAAAATTTAAATGAGGAGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGCTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATAtt                                                                                                                           <  2:609768/141‑1 (MQ=255)                     tGTTAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑Ta                                                                                                                        <  1:98248/141‑1 (MQ=255)                      gTTAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TAt                                                                                                                       >  2:196613/1‑141 (MQ=255)                        tAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TAtgc                                                                                                                     >  2:247094/1‑139 (MQ=255)                        tAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATcc                                                                                                                     >  2:257489/1‑141 (MQ=255)                         aagaaagaATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGGGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCt                                                                                                                    <  1:317093/141‑1 (MQ=255)                         aacatgaaattgaccatttaaatggtgtaatgttctatgatcacattgacaaagatcacccattacaaccacatacagatgcagtagaagtttaaaacacatttttctaattatcAAAGCTTAGGACATCATATT‑TATCCt                                                                                                                    >  1:464094‑M1/116‑141 (MQ=255)                         aacatgaaattgaccatttaaatggtgtaatgttctatgatcacattgacaaagatcacccattacaaccacatacagatgcagtagaagtttaaaacacatttttctaattatcAAAGCTTAGGACATCATATT‑TATCCt                                                                                                                    >  1:464102‑M1/116‑141 (MQ=255)                          agaaagaaTTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTa                                                                                                                   <  2:141655/141‑1 (MQ=255)                               agaTTAAAGGATTTTATATGAAATGTTAAAATTTAAACGAGGGGATTAAAAGTTTGGTAGAAAGGGTAATATATTTAACTGTTGTTTATTCGACAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCtt                                                                                                              <  2:133244/139‑1 (MQ=255)                                aaTTAAAGGATTTTACACGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCttt                                                                                                             <  1:228571/141‑1 (MQ=255)                                        gATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGATGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTa                                                                                                     >  2:196154/1‑141 (MQ=255)                                         aTTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAg                                                                                                    >  1:72584/1‑141 (MQ=255)                                                ttGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAATAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAGAAtg                                                                                             <  2:407114/140‑1 (MQ=255)                                                          aaaaTTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGATTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAAc                                                                                   >  2:404173/1‑141 (MQ=255)                                                           aaaTTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGGAAAATGTGTTTTAAACt                                                                                  >  2:330704/1‑141 (MQ=255)                                                           aaaTTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAGCt                                                                                  >  1:461080/1‑141 (MQ=255)                                                                  aaTGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATCAGCAGGAGCTGTACAATTATAAGCTTAGGACATCATATT‑TATCCTAAGCTTGGATAATTAGAAAAATGTGTTTTAAACTTCTACTg                                                                           >  1:156797/1‑141 (MQ=255)                                                                   aTGAGGGGATAAAAAGTTTGGTAGAACGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGCACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGc                                                                          <  1:410354/141‑1 (MQ=255)                                                                       ggggATAAAAAGTTTGGTAGAAAGGTGTATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGGAAAGCTTAGGACATCCTATT‑TATCCTAAGCTTTGGTAATTAGAAAAATGGGTTGTAAAATTCTACTGCAtac                                                                      >  1:31365/1‑139 (MQ=255)                                                                        gggATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTg                                                                     <  1:27379/141‑1 (MQ=255)                                                                          gATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCCTCGGTa                                                                   >  1:618615/1‑141 (MQ=255)                                                                            tAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTAtg                                                                 <  1:32262/141‑1 (MQ=255)                                                                               aaaGTGTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTgg                                                              <  2:66726/141‑1 (MQ=255)                                                                                aaGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGt                                                             >  2:134866/1‑141 (MQ=255)                                                                                 aGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTGTGTGGtt                                                            >  1:603288/1‑141 (MQ=255)                                                                                 aGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGtt                                                            <  1:551920/141‑1 (MQ=255)                                                                                      ggTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAACAGCTTAGGACATCATATT‑TATCCTAAGCTTCGCCGAGAAAAAAGAACTGATTTAAACTTCTACTCCATCTGTATGTGGTTGTaag                                                       >  1:652246/1‑140 (MQ=255)                                                                                      ggTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAAt                                                       >  2:187602/1‑141 (MQ=255)                                                                                       gTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATg                                                      >  2:535068/1‑141 (MQ=255)                                                                                            aaGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGa                                                 <  2:648589/141‑1 (MQ=255)                                                                                            aaGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTAATGCATCTGTATGTGGTTGTAATGGGTGa                                                 >  2:34764/1‑141 (MQ=255)                                                                                             ccacatacagatgcagtagaagtttaaaacacatttttctaattatcAAAGCTTAGGATAA‑ATATGATGTCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGAt                                                <  2:541602‑M1/94‑1 (MQ=255)                                                                                              ggTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATc                                               <  1:257489/141‑1 (MQ=255)                                                                                                  aaTATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTg                                           >  2:239277/1‑141 (MQ=255)                                                                                                   atatatTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGt                                          >  2:584674/1‑141 (MQ=255)                                                                                                   agatatTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGt                                          <  2:164167/139‑1 (MQ=255)                                                                                                    tatatTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTc                                         <  2:639661/141‑1 (MQ=255)                                                                                                    tagatTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTc                                         <  2:136814/138‑1 (MQ=255)                                                                                                              tgttgtTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCa                               >  1:338736/1‑141 (MQ=255)                                                                                                               gttgttTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCAt                              <  2:247051/141‑1 (MQ=255)                                                                                                                   tttATTCGAAAAACTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGaa                          <  2:480722/141‑1 (MQ=255)                                                                                                                         cGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATACTAGAACATTac                    >  2:486364/1‑141 (MQ=255)                                                                                                                            aaaaGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTTTTAATTAGAAAAATGTGTTTTAAAGTTCTACTGCATATGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATATTATAACATTACAcc                 >  2:234444/1‑141 (MQ=255)                                                                                                                            aaaaGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCATTGTGATCATAGTAGTTTacagc                 >  2:318122/1‑139 (MQ=255)                                                                                                                             atttttctaattatcAAAGCTTAGGATAA‑ATATGATGTCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCa                >  1:541602‑M1/16‑141 (MQ=255)                                                                                                                               aGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCAtt              >  1:466562/1‑141 (MQ=255)                                                                                                                                gTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACAACAttt             >  1:143349/1‑141 (MQ=255)                                                                                                                                  tGTAAAAGTAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTaa           <  2:651279/141‑1 (MQ=255)                                                                                                                                  tGTAAAAGGAAAAGCTTAGGCCATCATATT‑TATCCTAAGCTTTGCTAATTAGANAAATTTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTCTGTCAATTTGATCATAGACCATTACACCATTTaa           >  1:406502/1‑141 (MQ=255)                                                                                                                                   gTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTCCACCATTTaaa          >  2:440475/1‑141 (MQ=255)                                                                                                                                       aaGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTAAATGGt      >  1:33757/1‑141 (MQ=255)                                                                                                                                          gAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTTAATGTGATCATAGAACATTACACCATTTAAATGGTCaa   <  1:429531/141‑1 (MQ=255)                                                                                                                                           aaaaGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTAAATGGTCAAt  >  1:504053/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                             ATGTAGAGATTATAAATTAATGTTAAGAAAGAATTAAAGGATTTTATATGAAACGGTAAAATTTAAATGAGGGGATAAAAAGTTTGGTAGAAAGGTGAATATATTTAACTGTTGTTTATTCGAAAAAGTTGTAAAAGGAAAAGCTTAGGACATCATATT‑TATCCTAAGCTTTGATAATTAGAAAAATGTGTTTTAAACTTCTACTGCATCTGTATGTGGTTGTAATGGGTGATCTTTGTCAATGTGATCATAGAACATTACACCATTTAAATGGTCAAT  >  CP000730/1100574‑1100852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.