| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 48947 = | 70 (1.100) | 3 (0.050) | 3/258 | 10.2 | 4.5% | intergenic (‑56/+178) | ccrA/cch | cassette chromosome recombinase A/hypothetical protein |
| ? | CP000730 | 48972 = | 61 (1.030) | intergenic (‑81/+153) | ccrA/cch | cassette chromosome recombinase A/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACTGAATAATCGACGTATTGAAGATAGAACAAATAACGGAGTGAAAAACATGGATGAACTTATCGAGATATTAGCCGATTTGGTAATTGAAGAAATCAATCAAACAAATGACTAATATGGACGCCCAACATCTCATTGATGTTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/49094‑48947‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgttgggcGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGATTATTCAGTTTGATGCTTCACAGTTGT > CP000730/48972‑49111 AACTGAATAATCGACGTATTGAAGATAGAACAAATAACGGAGTGAAAAACATGGATGAACTTATCGAGATATTAGCCGATTTGGTAATTGAAGAAATCAATCAAACAAATGACTAATATGGACGCCCAACATCTCATTGAT < 2:45523/141‑1AACTGAATAATCGACGTATTGAAGATAGAACAAATAACGGAGTGAAAAACATGGATGAACTTATCGAGATATTAGCCGATTTGGTAATTGAAGAAATCAATCAAACAAATGACTAATATGGACGCCCAACATCTCATTGAT < 1:463877/141‑1 CTGAATAATCGACGTATTGAAGATAGAACAAATAACGGAGTGAAAAACATGGATGAACTTATCGAGATATTAGCCGATTTGGTAATTGAAGAAATCAATCAAACAAATGACTAATATGGACGCCCAACATCTCATTGATGT < 2:602503/141‑1 CTGAATAATCGACGTATTGAAGATAGAACAAATAACGGAGTGAAAAACATGGATGAACTTATCGAGATATTAGCCGATTTGGTAATTGAAGAAATCAATCAAACAAATGACTAATATGGACGCCCAACATCTCATTGATGT < 1:267527/141‑1 GAATAATCGACGTATTGAAGATAGAACAAATAACGGAGTGAAAAACATGGATGAACTTATCGAGATATTAGCCGATTTGGTAATTGAAGAAATCAATCAAACAAATGACTAATATGGACGCCCAACATCTCATTGATGTTG < 1:47422/141‑1 TAATCGACGTATTGAAGATAGAACAAATAACGGAGTGAAAAACATGGATGAACTTATCGAGATATTAGCCGATTTGGTAATTGAAGAAATCAATCAAACAAATGACTAATATGGACGCCCAACATCTCATTGATGTTGGGC > 2:482611/1‑141 atagaaGTATTGAAGATAGAACAAATAACGGAGTGAAAAACATGGATGAACTTATCGAGATATTAGCCGATTTGGTAATTGAAGAAATCAATCAAACAAATGACTAATATGGACGCCCAACATCTCATTGATGTTGGGCtt < 2:294554/135‑3 GAAATCAATCAAACAAATGACTAATATGGACGCACAAAATCTCATTGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTTAATTACCAAGTCGGCTAGTATCTCGATAAGTTCATCCATGTTTTTCACTCC > 1:28663/1‑141 AATGACTAATATGGACGCCCAACATCTCATTGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATC > 2:89070/1‑141 CATTGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGATTATTCAGTTTGAT > 2:565439/1‑141 ATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGATTATTCAGTTTGATGCTTC > 1:35550/1‑141 GTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCTTTTCGTTATTTGTTCTACCTTCAATACGACGATTTTTCAGTTTGCTGCTTCAC > 2:428205/1‑141 TGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGATTATTCAGTTTGATGCTTCACAG < 2:270049/141‑1 GGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGATTATTCAGTTTGATGCTTCACAGTT > 2:288774/1‑141 GCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGATTATTCAGTTTGATGCTTCACAGTTG < 2:520998/141‑1 GCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGATTATTCAGTTTGATGCTTCACAGTTG < 1:193085/141‑1 CGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGATTATTCAGTTTGATGCTTCACAGTTGT > 1:551345/1‑141 AACTGAATAATCGACGTATTGAAGATAGAACAAATAACGGAGTGAAAAACATGGATGAACTTATCGAGATATTAGCCGATTTGGTAATTGAAGAAATCAATCAAACAAATGACTAATATGGACGCCCAACATCTCATTGATGTTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/49094‑48947‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgttgggcGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGATTATTCAGTTTGATGCTTCACAGTTGT > CP000730/48972‑49111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |