| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 382471 = | 64 (1.010) | 4 (0.070) | 4/256 | 9.4 | 6.1% | intergenic (+4/+89) | USA300HOU_0349/ulaA | possible dehydrogenase/PTS family porter component IIC |
| ? | CP000730 | 382543 = | 65 (1.110) | intergenic (+76/+17) | USA300HOU_0349/ulaA | possible dehydrogenase/PTS family porter component IIC | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATTATTATCGTAGGTGCGACAACAATTTTATTAAAAGGCCGTCAAAAAGAACAGCAATAGTGTTAACGTAGAAATATAAAACACCGTCACATATTGAGTGAATGCCCCTTTTATCAAGAGGAAAGCCACTTACTTATGGACGGTGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/382620‑382471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacggtgttttATATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGTCGCACCTACGATAATAATAAATAGAATCGCACCAAATAATCCCATATATTTTACTGCGTTACCGAACACGATACCGACAG > CP000730/382543‑382681 TATTATTATCGTAGGTGCGACAACAATTTTATTAAAAGGCCGTCAAAAAGAACAGCAATAGTGTTAACGTAGAAATATAAAACACCGTCACATATTGAGTGAATGCCCCTTTTATCAAGAGGAAAGCCACTTACTTATGGA < 2:218800/141‑1 TTATTATCGTAGGTGCGACAACAATTTTATTAAAAGGCCGTCAAAAAGAACAGCAATAGTGTTAACGTAGAAATATAAAACACCGTCACATATTGAGTGAATGCCCCTTTTATCAAGAGGAAAGCCACTTACTTATGGACG < 1:402075/141‑1 TATTATCGTAGGTGCGACAACAATTTTATTAAAAGGCCGTCAAAAAGAACAGCAATAGTGTTAACGTAGAAATATAAAACACCGTCACATATTGAGTGAATGCCCCTTTTATCAAGAGGAAAGCCACTTACTTATGGACGG < 1:380768/141‑1 TATCGTAGGTGCGACAACAATTTTATTAAAAGGCCGTCAAAAAGAACAGCAATAGTGTTAACGTAGAAATATAAAACACCGTCACATATTGAGTGAATGCCCCTTTTATCAAGAGGAAAGCCACTTACTTATGGACGGTGT < 1:159164/141‑1 ATCGTAGGTGCGACAACAATTTTATTAAAAGGCCGTCAAAAAGAACAGCAATAGTGTTAACGTAGAAATATAAAACACCGTCACATATTGAGTGAATGCCCCTTTTATCAAGAGGAAAGCCACTTACTTATGGACGGTGTT > 1:158484/1‑141 GTAGAAATATAAAACACCGTCACATATTGAGTGAATGCCCCTTTTATCAAGAGGAAAGCCACTTACTTATGGACGGTGTTTTATATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGT > 2:72028/1‑141 ACACCGTCACATATTGAGTGAATGCCCCTTTTATCAAGAGGAAAGCCACTTACTTATGGACGGTGTTTTGTATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGTCGCACCTACGATA > 1:662725/1‑141 GTCACATATTGAGTGAATGCCCCTTTTATCAAGAGGAAAGCCACTTACTTATGGACGGTGTTTTATATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGTCGCACCTACGATAATAAT > 2:222346/1‑141 TCAAGAGGAAAGCCACTTACTTATGGACGGTGTTTTATATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGTCGCACCTACGATAATAATAAATAGAATCGCACCAAATAATCCCATA < 1:72028/141‑1 GTTTTATATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGTCGCACCTACGATAATAATAAATAGAATCGCACCAAATAATCCCATATATTTTACTGCGTTACCGAACACGATACCGA < 1:385679/141‑1 TTTTATATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGTCGCACCTACGATAATAATAAATAGAATCGCACCAAATAATCCCATATATTTTACTGCGTTACCGAACACGATACCGAC > 2:452441/1‑141 TTTTATATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGTCGCACCTACGATAATAATAAATAGAATCGCACCAAATAATCCCATATATTTTACTGCGTTACCGAACACGATACCGAC > 1:621409/1‑141 TTTTATATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGTCGCACCTACGATAATAATAAATAGAATCGCACCAAATAATCCCATATATTTTACTGCGTTACCGAACACGATACCAAC < 2:61769/141‑1 TTATATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGTCGCACCTACGATAATAATAAATAGAATCGCACCAAATAATCCCATATATTTTACTGCGTTACCGAACACGATACCGACAG < 2:116866/141‑1 TTATATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGTCGCACCTACGATAATAATAAATAGAATCGCACCAAATAATCCCATATATTTTACTGCGTTACCGAACACGATACCGACAG < 1:410482/141‑1 TATTATTATCGTAGGTGCGACAACAATTTTATTAAAAGGCCGTCAAAAAGAACAGCAATAGTGTTAACGTAGAAATATAAAACACCGTCACATATTGAGTGAATGCCCCTTTTATCAAGAGGAAAGCCACTTACTTATGGACGGTGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/382620‑382471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacggtgttttATATTTCTACGTTAACACTATTGCTGTTCTTTTTGACGGCCTTTTAATAAAATTGTTGTCGCACCTACGATAATAATAAATAGAATCGCACCAAATAATCCCATATATTTTACTGCGTTACCGAACACGATACCGACAG > CP000730/382543‑382681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |