| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 490618 | 70 (1.100) | 3 (0.050) | 3/262 | 10.3 | 4.3% | coding (219/843 nt) | metQ | ABC superfamily ATP binding cassette transporter, binding protein |
| ? | CP000730 | = 490649 | 66 (1.100) | coding (250/843 nt) | metQ | ABC superfamily ATP binding cassette transporter, binding protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAGTAACAATTGGTGTCGCATCAAATGACACTAAGGCTTGGGAGAAGGTTAAAGAATTAGCTAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTAAATGATGGTGATATTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/490472‑490618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattgatCTAAAAATGCAAAATGTTGGAATGCATTCATATCAATATCACCATCATTTAATGCTTTATTCGGTAAATTGTAATCTGAGAAGTGCTTAATCTCCACATCAATATCATCTTTTTTAGCTAATTCTTTAACCTTCTCCC < CP000730/490649‑490512 AAAGTAACAATTGGTGTCGCATCAAATGACACTAAGGCTTGGGAGAAGGTTAAAGAATTAGCTAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTAAATGATGGTGAT > 2:391712/1‑141 AGTAACAATTGGTGTCGCATCAAATGACACTAAGGCTTGGGAGAAGGTTAAAGAATTAGCTAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTAAATGATGGTGATAT > 2:632736/1‑141 AGTAACAATTGGTGTCGCATCAAATGACACTAAGGCTTGGGAGAAGGTTAAAGAATTAGCTAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTAAATGATGGTGATAT < 1:191805/141‑1 GTAACAATTGGTGTCGCATCAAATGACACTAAGGCTTGGGAGAAGGTTAAAGAATTAGCTAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTGAATGATGGTGATATT > 1:565927/1‑141 GTAACAATTGGTGTCGCATCAAATGACACTAAGGCTTGGGAGAAGGTTAAAGAATTAGCTAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTAAATGATGGTGATATT < 1:376880/141‑1 GTAACAATTGGTGTCGCATCAAATGACACTAAGGCTTGGGAGAAGGTTAAAGAATTAGCTAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTAAATGATGGTGATATT < 1:269860/141‑1 GTAACAATTGGTGTCGCATCAAATGACACTAAGGCTTGGGAGAAGGTTAAAGAATTAGCTAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTAAATGATGGTGATATT < 2:648176/141‑1 GAAGGTTAAAGAATTAGCTAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTAAATGATGGTGATATTGATCTAAAACTGCGAAATGTTTGAATGCATTCATATCAATA < 2:24522/141‑1 AGGTTAAAGAATTAGCCAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTAAATGATGGTGATATTGATCTAAAAATGCAAAATGTTGGAATGCATTCATATCAATATC < 1:72111/141‑1 AAAGAATTAGCTAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTAAATGATGGTGATATTGATCTAAAAATGCAAAATGTTGGAATGCATTCATATCAATATCACCAT < 2:2653/141‑1 TATTGATCTAAAAATGCAAAATGTTGGAATGCATTCATATCAATATCACCATCATTTAATGCTTTATTCGGTAAATTCTAATCTGAGAAGTGCTTAATCTCCACATCAACATCATCTTTTTTAGCTAATTCTTTAACCTTC > 2:668216/1‑141 GATCTAAAAATGCAAAATGTTGGAATGCATTCATATCAATATCACCATCATTTAATGCTTTATTCGGTAAATTGTAATCTGAGAAGTGCTTAATCTCCACATCAATATCATCTTTTTTAGCTAATTCTTTAACCTTCTCCC < 1:119180/141‑1 AAAGTAACAATTGGTGTCGCATCAAATGACACTAAGGCTTGGGAGAAGGTTAAAGAATTAGCTAAAAAAGATGATATTGATGTGGAGATTAAGCACTTCTCAGATTACAATTTACCGAATAAAGCATTAAATGATGGTGATATTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/490472‑490618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattgatCTAAAAATGCAAAATGTTGGAATGCATTCATATCAATATCACCATCATTTAATGCTTTATTCGGTAAATTGTAATCTGAGAAGTGCTTAATCTCCACATCAATATCATCTTTTTTAGCTAATTCTTTAACCTTCTCCC < CP000730/490649‑490512 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |