mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 55.0% | 67.6 / 248.7 | 199 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,512 | 0 | A | G | 47.6% | 45.0 / 175.1 | 128 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,516 | 0 | C | A | 46.9% | 64.8 / 174.4 | 130 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,560 | 0 | T | C | 24.7% | 192.4 / 57.6 | 97 | R210R (CGT→CGC) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2431245 = | 103 (1.040) | 3 (0.030) | 3/276 | 11.6 | 3.2% | coding (285/693 nt) | USA300HOU_2294 | transcriptional regulator |
| ? | CP000730 | 2431338 = | 83 (0.900) | coding (378/693 nt) | USA300HOU_2294 | transcriptional regulator | |||||