mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,798,959 | 0 | G | A | 53.6% | ‑4.6 / 39.8 | 28 | D397D (GAC→GAT) | icd | isocitrate dehydrogenase (NADP(+)) |
| * | CP000730 | 512,643 | 0 | A | G | 43.2% | 41.3 / 100.2 | 81 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,512 | 0 | A | G | 32.1% | 61.5 / 47.8 | 53 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,516 | 0 | C | A | 32.1% | 90.0 / 49.2 | 53 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 2,000,857 | 1 | . | C | 30.8% | 19.9 / 15.4 | 13 | noncoding (535/2921 nt) | rrl3 | 23S ribosomal RNA |
| * | CP000730 | 110,660 | 0 | T | A | 25.0% | 111.5 / 30.2 | 44 | I173I (ATT→ATA) | USA300HOU_0109 | staphylococcal tandem lipoprotein |
| * | CP000730 | 1,431,769 | 0 | A | G | 23.8% | 70.0 / 24.4 | 42 | K340R (AAA→AGA) | lysC2 | aspartate kinase |
| * | CP000730 | 2,000,908 | 0 | C | G | 20.8% | 54.4 / 11.5 | 24 | noncoding (484/2921 nt) | rrl3 | 23S ribosomal RNA |
| * | CP000730 | 110,651 | 0 | C | T | 20.4% | 109.5 / 17.2 | 44 | D170D (GAC→GAT) | USA300HOU_0109 | staphylococcal tandem lipoprotein |