| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 365040 | 96 (1.070) | 6 (0.070) | 4/252 | 14.4 | 5.9% | intergenic (+50/+55) | nupC/USA300HOU_0334 | possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter |
| ? | CP000730 | = 365070 | 103 (1.260) | intergenic (+80/+25) | nupC/USA300HOU_0334 | possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATAAACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/364890‑365040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccccgtcacTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCAAGTAG < CP000730/365070‑364931 ATAAACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAA < 1:137502/141‑1 AACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACC > 1:258507/1‑141 GAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCA < 2:750789/141‑1 GAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCA > 1:63420/1‑141 AGAAAAATTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCGTCAATCATTTCAGTATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAC < 1:332623/141‑1 AGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAC < 2:213330/141‑1 TTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACT < 1:79832/141‑1 TTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACT < 1:898901/141‑1 TTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACT < 1:795238/141‑1 TTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCCCCGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGG < 1:745549/141‑1 AGCTTCAATCATTTCANGATCAATCATTGNCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTT > 1:624106/1‑141 AATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCTAACTTGGTGACGGGGTTTAGCTTTGCCATG < 2:360806/141‑1 TGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGT < 1:119497/52‑1 TGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGT > 2:119497/1‑52 AACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCGATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTG > 1:950944/1‑141 ACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGA > 1:282892/1‑141 gCCCGGCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTGAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAA < 1:360850/140‑1 CCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAA > 2:845617/1‑141 CCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAA < 1:829134/141‑1 CCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAAC > 1:936555/1‑141 CGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCA < 2:937900/141‑1 TCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCAAG > 1:351759/1‑141 CACTAAGTTATGATGCGCTGCTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCAAGT < 2:599180/141‑1 ACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCAAGTA > 2:564320/1‑141 CTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCAAGTAG < 1:616509/141‑1 ATAAACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/364890‑365040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccccgtcacTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCAAGTAG < CP000730/365070‑364931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |