BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 365040	96 (1.070)	6 (0.070)	4/252	14.4	5.9%	intergenic (+50/+55)	nupC/USA300HOU_0334	possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter
*	?	CP000730	= 365070	103 (1.260)	6 (0.070)	4/252	14.4	5.9%	intergenic (+80/+25)	nupC/USA300HOU_0334	possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 114 total aligned reads displayed.

CTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAG  >  CP000730/364931‑365210

cTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAg                                                                                                                                             >  1:616509/1‑141 (MQ=255)

 tACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGt                                                                                                                                            <  2:564320/141‑1 (MQ=255)

  aCTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAGCAGCGCATCATAACTTAGTg                                                                                                                                           >  2:599180/1‑141 (MQ=255)

   cTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGa                                                                                                                                          <  1:351759/141‑1 (MQ=255)

     tGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACg                                                                                                                                        >  2:937900/1‑141 (MQ=255)

       gTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACggg                                                                                                                                      <  1:936555/141‑1 (MQ=255)

        ttCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTCAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGCCgggc                                                                                                                                     >  1:360850/1‑140 (MQ=255)

        ttCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACgggg                                                                                                                                     >  1:829134/1‑141 (MQ=255)

        ttCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACgggg                                                                                                                                     <  2:845617/141‑1 (MQ=255)

         tCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGt                                                                                                                                    <  1:282892/141‑1 (MQ=255)

          cAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATCGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGtt                                                                                                                                   <  1:950944/141‑1 (MQ=255)

                tAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa                                                                                                                             >  2:93141/1‑141 (MQ=255)

                  ccTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATa                                                                                                                           <  1:378445/140‑1 (MQ=255)

                   cTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATaa                                                                                                                          >  1:254315/1‑141 (MQ=255)

                      cAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa                                                                                                                       <  2:3792/141‑1 (MQ=255)

                        aTCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACCGGGTTTTATCATAACAATc                                                                                                                     <  1:78908/141‑1 (MQ=255)

                         tCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCt                                                                                                                    >  2:955271/1‑141 (MQ=255)

                         tCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCt                                                                                                                    >  1:92842/1‑141 (MQ=255)

                           aTTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc                                                                                                                  <  1:140285/141‑1 (MQ=255)

                           aTTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc                                                                                                                  >  2:458826/1‑141 (MQ=255)

                             ttCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAGATTCATGGCAACGCTATCCAGGGTGTAGAAGTTGGCGGCACGGAGATTACTACCTTAGGGCCGGGGTTTTATCATCACAATCTACtt                                                                                                                >  1:867226/1‑141 (MQ=255)

                              tCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttt                                                                                                               <  2:406102/141‑1 (MQ=255)

                                 ggATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTCGTGACGGGGTTTTATCATAACAATCTACTTTTTc                                                                                                            >  1:896195/1‑141 (MQ=255)

                                  gATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCg                                                                                                           >  2:909337/1‑141 (MQ=255)

                                        tcaTTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg                                                                                                     <  1:162135/141‑1 (MQ=255)

                                         caTTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt                                                                                                    >  2:742709/1‑141 (MQ=255)

                                           ttGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt                                                                                                  >  1:48520/1‑141 (MQ=255)

                                           ttGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt                                                                                                  <  2:401022/141‑1 (MQ=255)

                                           ttGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt                                                                                                  >  2:141771/1‑141 (MQ=255)

                                            tGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtttt                                                                                                 >  1:263741/1‑141 (MQ=255)

                                             ggCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttttt                                                                                                <  1:125098/141‑1 (MQ=255)

                                              gCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTg                                                                                               <  1:13592/141‑1 (MQ=255)

                                                 tagcaTTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa                                                                                            >  2:24093/5‑141 (MQ=255)

                                                   gTATTGTAAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAat                                                                                           <  1:439693/141‑1 (MQ=255)

                                                   gTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg                                                                                          >  2:834818/1‑141 (MQ=255)

                                                         t‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGtt                                                                                    >  2:262757/1‑141 (MQ=255)

                                                           aaaTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACGATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTg                                                                                   <  2:711673/141‑1 (MQ=255)

                                                            aaTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa                                                                                  >  2:864894/1‑141 (MQ=255)

                                                             aTGAATCGAAGTACCTAAATTAAATTCATGGAAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGAt                                                                                 <  1:328437/141‑1 (MQ=255)

                                                                aaTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt                                                                              >  2:201091/1‑141 (MQ=255)

                                                                 aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt                                                                             >  1:328800/1‑141 (MQ=255)

                                                                 aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt                                                                             <  1:429461/141‑1 (MQ=255)

                                                                 aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt                                                                             <  2:92842/141‑1 (MQ=255)

                                                                   cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTa                                                                           >  1:100906/1‑141 (MQ=255)

                                                                        tACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttt                                                                      <  1:555338/141‑1 (MQ=255)

                                                                         aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt                                                                     <  2:286948/141‑1 (MQ=255)

                                                                         aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt                                                                     <  1:516269/141‑1 (MQ=255)

                                                                         aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt                                                                     <  1:66701/141‑1 (MQ=255)

                                                                          ccTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATCACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCTTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttttt                                                                    >  1:915697/1‑141 (MQ=255)

                                                                          ccTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttttt                                                                    <  2:75848/141‑1 (MQ=255)

                                                                           cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTc                                                                   >  2:375366/1‑141 (MQ=255)

                                                                            taaattaaatTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCa                                                                  >  2:817822/1‑141 (MQ=255)

                                                                              aattaaattCATGGGAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaa                                                                <  1:439593/141‑1 (MQ=255)

                                                                              aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaa                                                                >  1:421533/1‑141 (MQ=255)

                                                                              aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaa                                                                >  2:255008/1‑141 (MQ=255)

                                                                                    attCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTAAAAAATTGt                                                          <  2:389841/141‑1 (MQ=255)

                                                                                     ttCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGtt                                                         >  2:777666/1‑141 (MQ=255)

                                                                                       cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTaa                                                       >  1:98811/1‑141 (MQ=255)

                                                                                            cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCg                                                  >  2:380091/1‑141 (MQ=255)

                                                                                             aaaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGt                                                 <  1:968608/141‑1 (MQ=255)

                                                                                              aaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGtt                                                <  1:319208/141‑1 (MQ=255)

                                                                                                  tAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTatat                                            <  2:243281/141‑1 (MQ=255)

                                                                                                   aaaCCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATc                                           >  1:645709/1‑141 (MQ=255)

                                                                                                   aaaCCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATc                                           >  1:303539/1‑141 (MQ=255)

                                                                                                    aaCCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCTGTTATATCt                                          >  2:910855/1‑141 (MQ=255)

                                                                                                          gtccacaaggtttcgcAACAGCTCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTa                                    <  2:280666/128‑1 (MQ=255)

                                                                                                          gTCACCAAGTTGGCGCAACCGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTa                                    <  2:191491/141‑1 (MQ=255)

                                                                                                          gTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTa                                    <  1:617580/141‑1 (MQ=255)

                                                                                                          gTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTa                                    <  1:937900/141‑1 (MQ=255)

                                                                                                          gTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTa                                    <  1:109601/141‑1 (MQ=255)

                                                                                                           tCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTAt                                   <  1:709290/141‑1 (MQ=255)

                                                                                                            ctccAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACTATCTCCTTTTTCGTAGCCGTTTTTGCAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATg                                  <  1:24093/139‑1 (MQ=255)

                                                                                                               cAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGttt                               <  2:267200/141‑1 (MQ=255)

                                                                                                                aaGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGtttt                              >  1:269540/1‑141 (MQ=255)

                                                                                                                aaGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGATTTTGATATGTATGATGATTGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGtttt                              >  1:433741/1‑141 (MQ=255)

                                                                                                                  gTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGa                            >  2:819023/1‑141 (MQ=255)

                                                                                                                     ggCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAgg                         <  1:682056/141‑1 (MQ=255)

                                                                                                                     ggCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAgg                         <  2:315161/141‑1 (MQ=255)

                                                                                                                     ggCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATATTTTTCACAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAgg                         <  2:834210/141‑1 (MQ=255)

                                                                                                                      gcgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAggg                        <  2:809938/141‑1 (MQ=255)

                                                                                                                       cgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGa                       >  1:343122/1‑141 (MQ=255)

                                                                                                                          aaCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACaa                    <  1:812073/141‑1 (MQ=255)

                                                                                                                          aaCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACaa                    <  1:819023/141‑1 (MQ=255)

                                                                                                                          aaCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACaa                    <  2:118536/141‑1 (MQ=255)

                                                                                                                          aaCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGCTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACaa                    <  1:843511/141‑1 (MQ=255)

                                                                                                                          aaCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAACCTACTTTTTCGTAGCAGTTTTTGAAATGTATGTTGATGGTTAATAAAAAAAAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACaa                    <  2:244097/141‑1 (MQ=255)

                                                                                                                           aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAAt                   <  1:643317/141‑1 (MQ=255)

                                                                                                                           aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAAt                   <  1:141771/141‑1 (MQ=255)

                                                                                                                            cAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATg                  <  1:651592/141‑1 (MQ=255)

                                                                                                                            cAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATg                  <  1:371275/141‑1 (MQ=255)

                                                                                                                            cAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATg                  <  1:955271/141‑1 (MQ=255)

                                                                                                                              gcgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGaa                >  2:296202/1‑141 (MQ=255)

                                                                                                                              gcgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGaa                <  1:348260/141‑1 (MQ=255)

                                                                                                                                gcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGc              >  1:456431/1‑141 (MQ=255)

                                                                                                                                gcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGc              <  1:538647/141‑1 (MQ=255)

                                                                                                                                 catcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCt             >  1:392325/1‑141 (MQ=255)

                                                                                                                                  atcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTa            <  2:421533/141‑1 (MQ=255)

                                                                                                                                  atcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTa            <  1:167367/141‑1 (MQ=255)

                                                                                                                                  atcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTa            <  1:817434/141‑1 (MQ=255)

                                                                                                                                   tcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTTTTTTTTTTTTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAACGGACAATGACGCTaa           >  2:888274/1‑141 (MQ=255)

CTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGT‑AAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAG  >  CP000730/364931‑365210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.