| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1040357 = | 80 (0.890) | 5 (0.060) | 4/248 | 14.2 | 6.0% | intergenic (‑6774/‑932) | USA300HOU_0983/USA300HOU_0984 | competence protein/glycosyltransferase |
| ? | CP000730 | 1040412 = | 86 (1.070) | intergenic (‑6829/‑877) | USA300HOU_0983/USA300HOU_0984 | competence protein/glycosyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGAAAAATCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1040510‑1040357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACTAAAGATAACAA > CP000730/1040412‑1040546 ACGAAAAATCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTACCCAT > 1:381042/1‑141 GAAAAATCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTG > 1:583844/1‑141 GAAAAATCAATTACATTTATTACTAATCGTATTAAATACTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTG > 2:74174/1‑141 AAAATGAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTTCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCNCATTGAT > 2:727102/1‑141 AAAATCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTTTTTTTTTCTTTGTTACTTTCATAACTTATTAACACAGTATAAAAGTCAATCAAACGGAGTGTTGCAGCCAACATTTCCCATTGAT > 2:580094/1‑141 AAAATCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGAT > 2:286399/1‑141 AAATCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATT < 1:184327/141‑1 AAATCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTAATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATT > 2:11875/1‑141 AATCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATCGATag > 1:688316/1‑139 ATCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCTTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGt > 2:285336/1‑140 ATCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTAATAACTTCGTAAAAAAGTCTAAAAGCCAATCAAAAGGAGTGTTGAAGTCAACATTTCCCATTGATTGG > 1:815047/1‑141 TCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGC > 1:558550/1‑141 AATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCATATCTAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTT > 1:8807/1‑141 ATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTT > 1:965436/1‑141 GCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGA > 2:35663/1‑141 GCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGA > 2:588512/1‑141 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTT > 1:773130/1‑141 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCG > 1:894104/1‑141 GAGTGTTGAAGTCAACATTTCCCATGGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTA > 2:626580/1‑141 TTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACTAAA > 2:816479/1‑141 GGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACTAAAGATAAC > 2:887247/1‑141 CTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCTTTTTAATATAGCAAAAAACAATGACTAAAGATAACAA > 2:892264/1‑141 ACGAAAAATCAATTACATTTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1040510‑1040357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACTAAAGATAACAA > CP000730/1040412‑1040546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |