New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1040357 =	80 (0.890)	5 (0.060)	4/248	14.2	6.0%	intergenic (‑6774/‑932)	USA300HOU_0983/USA300HOU_0984	competence protein/glycosyltransferase
	?	CP000730	1040412 =	86 (1.070)					intergenic (‑6829/‑877)	USA300HOU_0983/USA300HOU_0984	competence protein/glycosyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACTAAAGATAACAACAATAT  >  CP000730/1040272‑1040552                                                                                                                                             |                                                                                                                                             tGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtat                                                                                                                                              <  1:692074/141‑1 (MQ=255)  ggCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtata                                                                                                                                             >  1:606402/1‑141 (MQ=255)    cTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACt                                                                                                                                           <  1:69216/141‑1 (MQ=255)      aTTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgt                                                                                                                                         >  1:181018/1‑141 (MQ=255)        tGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTgtgt                                                                                                                                       <  2:797928/141‑1 (MQ=255)           aaaTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCTAAAAGATAAAATTAAAAGCCAATCAATGGGATATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTAc                                                                                                                                    >  2:289399/1‑141 (MQ=255)           aaaTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTATGATTGGCTTTTATACTGTGTTAc                                                                                                                                    >  2:842831/1‑141 (MQ=255)            aaTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACt                                                                                                                                   <  2:664877/141‑1 (MQ=255)            aaTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACt                                                                                                                                   <  2:664796/141‑1 (MQ=255)              tCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa                                                                                                                                 >  1:474107/1‑141 (MQ=255)              tCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa                                                                                                                                 <  1:415266/141‑1 (MQ=255)                  tgtgACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTa                                                                                                                             >  2:654856/1‑141 (MQ=255)                   gtgACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTAt                                                                                                                            >  2:793225/1‑141 (MQ=255)                   gtgACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTAt                                                                                                                            >  1:837811/1‑141 (MQ=255)                    tgACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATg                                                                                                                           >  1:152871/1‑141 (MQ=255)                        gAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGATATGaaaa                                                                                                                       >  2:609301/1‑140 (MQ=255)                           ataataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaa                                                                                                                    >  2:820843/1‑141 (MQ=255)                            taataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACGGCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaac                                                                                                                   <  1:17802/141‑1 (MQ=255)                             aataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCCATGGGAAACGTTGACTTCACCACTCCGTTTGCTTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaaca                                                                                                                  <  1:141230/141‑1 (MQ=255)                                 gATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACgg                                                                                                              >  1:524843/1‑141 (MQ=255)                                 gATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACgg                                                                                                              >  2:241770/1‑141 (MQ=255)                                      aGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAAc                                                                                                         <  1:842663/141‑1 (MQ=255)                                       gAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACt                                                                                                        <  1:21413/141‑1 (MQ=255)                                          cAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaa                                                                                                     >  2:965436/1‑141 (MQ=255)                                          cAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaa                                                                                                     <  2:121175/141‑1 (MQ=255)                                            gTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGAGTTACTAAGTTATGAAAGTaacaaaaaaaaaaaaaaaa                                                                                                   <  2:230778/141‑15 (MQ=255)                                               taGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaaaaaa                                                                                                >  1:674425/1‑141 (MQ=255)                                                aGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAAccaaggctttg                                                                                               >  1:660770/1‑131 (MQ=255)                                                aGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAg                                                                                               <  1:501329/141‑1 (MQ=255)                                                 gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGc                                                                                              >  1:769397/1‑141 (MQ=255)                                                 gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGc                                                                                              <  1:48100/141‑1 (MQ=255)                                                        aGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtat                                                                                                                                              >  2:868665/1‑86 (MQ=255)                                                        aGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtat                                                                                                                                              <  1:868665/86‑1 (MQ=255)                                                         gCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAANTAACAACGGCAAACTGAAAAAAAGCAATataat                                                                                      <  1:835067/141‑1 (MQ=255)                                                         gCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATataat                                                                                      <  1:112129/141‑1 (MQ=255)                                                             cTATGTGATAACCAAAATATAAAATTAAAAGACAATTATTGGGAAATGTTGACTTCAACACTCCGTTGGATAGGCTTTTATACTTCGTTACTAAGTTACGAAAATAAGAACGGCAAAAAGAAAAAAAGCAATataataata                                                                                  <  2:710983/141‑1 (MQ=255)                                                             cTATGTAATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGCGTTACTAAGTTATGAAAGTAACAACGAAAAAATAAAAAAAAGCAATataataata                                                                                  <  2:120582/141‑1 (MQ=255)                                                              tATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAatat                                                                                 <  1:702983/141‑1 (MQ=255)                                                                tgtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATAttt                                                                               >  1:295844/1‑141 (MQ=255)                                                                  tgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTaa                                                                             <  1:303647/141‑1 (MQ=255)                                                                  agATAACCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAAAAAAAAAAAAAAAAAAAGCAATATAATAATATTTaa                                                                             <  2:546932/140‑1 (MQ=255)                                                                   gATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAAt                                                                            <  1:752571/141‑1 (MQ=255)                                                                    ataaaaaaaaaaTAAAATTAAAAGCCAAACAAAGGAAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATAATGTGTTACTAAGTTATGAAAGTAACAAAAAAAAAAAAAAAAAAAGCAATATAATAATATTTAATa                                                                           <  2:910481/135‑1 (MQ=255)                                                                              aaaaaaaTAAAAAGACAATAAATGGGAAATGTTGACTGAAACACTCCGTTTGATTGGCTCTTATAATATGTTACTAAGTTATGAAAGTAACAAAGAAAAAATAAAAAAAAGCAATATAATAATATTTAATACGATTAGtaa                                                                 <  2:493554/138‑1 (MQ=255)                                                                                tAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGtaata                                                               <  2:508680/141‑1 (MQ=255)                                                                                  aaaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATaaa                                                             >  2:944529/1‑141 (MQ=255)                                                                                     ttAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGt                                                          >  1:301479/1‑141 (MQ=255)                                                                                        aaaGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAAt                                                       <  1:965436/141‑1 (MQ=255)                                                                                         aaGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTAGATATGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAAtt                                                      <  1:8807/141‑1 (MQ=255)                                                                                           gCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGa                                                    <  1:558550/141‑1 (MQ=255)                                                                                            ccAATCAATGGGAAATGTTGACTTCAACACTCCTTTTGATTGGCTTTTAGACTTTTTTACGAAGTTATTAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGAt                                                   <  1:815047/141‑1 (MQ=255)                                                                                            acaatcaatGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAAAGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGAt                                                   <  2:285336/140‑1 (MQ=255)                                                                                             ctatcgatGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGAtt                                                  <  1:688316/139‑1 (MQ=255)                                                                                              aatcaatGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATTAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGAttt                                                 <  2:11875/141‑1 (MQ=255)                                                                                              aatcaatGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGAttt                                                 >  1:184327/1‑141 (MQ=255)                                                                                               atgaatGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGAtttt                                                <  2:623613/138‑1 (MQ=255)                                                                                               atcaatGNGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGAAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTCAtttt                                                <  2:727102/141‑1 (MQ=255)                                                                                               atcaatGGGAAATGTTGGCTGCAACACTCCGTTTGATTGACTTTTATACTGTGTTAATAAGTTATGAAAGTAACAAAGAAAAAAAAAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGAtttt                                                <  2:580094/141‑1 (MQ=255)                                                                                               atcaatGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGAtttt                                                <  2:286399/141‑1 (MQ=255)                                                                                                 caatGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAGTATTTAATACGATTAGTAATAAATGTAATTGATTTTTc                                              <  2:74174/141‑1 (MQ=255)                                                                                                 caatGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTc                                              <  1:583844/141‑1 (MQ=255)                                                                                                  aatGGGAAAAGTTGAATTCCACACTCCTTTTAATTGGCTTTGATACTGTGATACTAAGTTATAAAAGTAACAAAAAAAAAAAAAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCg                                             <  2:808879/141‑1 (MQ=255)                                                                                                   atGGGTAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGt                                            <  1:381042/141‑1 (MQ=255)                                                                                                             ttGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAg                                  >  2:180152/1‑141 (MQ=255)                                                                                                             ttGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAg                                  <  1:602089/141‑1 (MQ=255)                                                                                                              tGACATCAACACTACGTTTGATTAGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACAGCAAAATAAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGc                                 <  2:160804/141‑1 (MQ=255)                                                                                                               gACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAAGATAAAAATATTTAATACGACTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCa                                >  2:743714/1‑141 (MQ=255)                                                                                                                aCTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCaa                               >  2:665540/1‑141 (MQ=255)                                                                                                                aCTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCaa                               >  1:71354/1‑141 (MQ=255)                                                                                                                 tttaaaCACTACGTTTGATTGGCTTTTATACTGTGTTACTAAATTATTAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCaaa                              <  2:882332/137‑1 (MQ=255)                                                                                                                 cTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCaaa                              <  2:388730/141‑1 (MQ=255)                                                                                                                 cTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCaaa                              >  1:173106/1‑141 (MQ=255)                                                                                                                 cTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCaaa                              >  2:690782/1‑141 (MQ=255)                                                                                                                 cTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCaaa                              >  2:541546/1‑141 (MQ=255)                                                                                                                 cTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCaaa                              >  2:422293/1‑141 (MQ=255)                                                                                                                  ttCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGAAAAATGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCaaaa                             <  2:253139/141‑1 (MQ=255)                                                                                                                   tCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATTAAAGTAACAACGGCAAACTGAAAAAAAGCATTATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCaaaaa                            >  1:464684/1‑141 (MQ=255)                                                                                                                   tCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCaaaaa                            >  2:89958/1‑141 (MQ=255)                                                                                                                         cTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATg                      <  1:820843/141‑1 (MQ=255)                                                                                                                         cTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATg                      >  2:346503/1‑141 (MQ=255)                                                                                                                         cTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATg                      <  1:736066/141‑1 (MQ=255)                                                                                                                           ccGTTTTATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAAAAAAAAACAATGAc                    <  2:181018/141‑1 (MQ=255)                                                                                                                           ccGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGAc                    >  2:531342/1‑141 (MQ=255)                                                                                                                            cGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACt                   >  1:163516/1‑141 (MQ=255)                                                                                                                              tttGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACTaa                 >  1:389211/1‑141 (MQ=255)                                                                                                                              tttGACTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACTaa                 >  2:67506/1‑141 (MQ=255)                                                                                                                               ttGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACTaaa                >  2:816479/1‑141 (MQ=255)                                                                                                                                     ggCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACTAAAGATaac          >  2:887247/1‑141 (MQ=255)                                                                                                                                       cTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCTTTTTAATATAGCAAAAAACAATGACTAAAGATaacaa        >  2:892264/1‑141 (MQ=255)                                                                                                                                             taCTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACTAAAGATAACAACAatat  >  2:273279/1‑141 (MQ=255)                                                                                                                                             taCTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTAATTATATCAGAAAACAATGACTAAAGATAACAACAagat  >  1:912477/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             TGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGATTTTTCGTTTTAATATAGCAAAAAACAATGACTAAAGATAACAACAATAT  >  CP000730/1040272‑1040552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.