New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	52489 =	94 (1.050)	38 (0.480)	4/246	14.2	30.3%	intergenic (+99/‑574)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
	?	CP000730	= 52983	91 (1.140)					intergenic (+593/‑80)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

GTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTT  >  CP000730/52349‑52629                                                                                                                                             |                                                                                                                                              gTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGa                                                                                                                                               <  1:402752/141‑1 (MQ=255)      gttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcg                                                                                                                                          <  2:465952/141‑1 (MQ=255)       ttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGCAAAATGTTGTGGAAATcgc                                                                                                                                         >  1:540239/1‑141 (MQ=255)        tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCATTTAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg                                                                                                                                        <  1:496647/141‑1 (MQ=255)           tttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGa                                                                                                                                     <  1:387665/141‑1 (MQ=255)            ttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaa                                                                                                                                    <  1:715803/141‑1 (MQ=255)              ttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaat                                                                                                                                  >  2:347774/1‑141 (MQ=255)               tAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaata                                                                                                                                 >  2:391555/1‑141 (MQ=255)                aaaGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaataa                                                                                                                                >  1:135904/1‑141 (MQ=255)                  aGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑c                                                                                                                             >  2:478391/1‑141 (MQ=255)                   gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑Ca                                                                                                                            >  2:32056/1‑141 (MQ=255)                   gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑Ca                                                                                                                            >  1:225139/1‑141 (MQ=255)                    cATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑Cag                                                                                                                           <  2:783116/141‑1 (MQ=255)                     aTTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑Caga                                                                                                                          <  1:839526/141‑1 (MQ=255)                      ttAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑Cagag                                                                                                                         >  1:501537/1‑141 (MQ=255)                      ttAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑Cagag                                                                                                                         <  2:208797/141‑1 (MQ=255)                       tAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAgg                                                                                                                        <  2:460282/141‑1 (MQ=255)                         gATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGaa                                                                                                                      <  2:583546/141‑1 (MQ=255)                          aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGGGCAATGTAGAAGAAAGTGCGGGAAATAAT‑CAGAGGatt                                                                                                                     >  1:671789/1‑139 (MQ=255)                          aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAAt                                                                                                                     >  2:784625/1‑141 (MQ=255)                          aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAAt                                                                                                                     >  2:53527/1‑141 (MQ=255)                            gCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCg                                                                                                                   <  1:69245/141‑1 (MQ=255)                             ccTTAAAGAAATAGTTTTTTTCTTTTTTTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGt                                                                                                                  >  2:501073/1‑141 (MQ=255)                             ccTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGt                                                                                                                  >  2:538253/1‑141 (MQ=255)                               ttAAAGAACTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGACAAATGTCGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGttt                                                                                                                <  1:833198/141‑1 (MQ=255)                               ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGttt                                                                                                                <  1:33654/141‑1 (MQ=255)                                tAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGGAGTCTTAAGCGTTCGGAAATACGAAAAATGTTGTGGAAATCCCGTGAAATAAT‑CAGAGGAATCGTTTg                                                                                                               <  2:484634/141‑1 (MQ=255)                                  aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGaa                                                                                                             >  2:217325/1‑141 (MQ=255)                                   aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGaaa                                                                                                            >  2:929550/1‑141 (MQ=255)                                   aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGaaa                                                                                                            >  2:655694/1‑141 (MQ=255)                                    gAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAat                                                                                                           <  1:251406/141‑1 (MQ=255)                                      aaTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAatca                                                                                                         >  2:415086/1‑141 (MQ=255)                                        tAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAatcatc                                                                                                       >  1:381773/1‑141 (MQ=255)                                            ttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCgtag                                                                                                   <  2:356874/141‑1 (MQ=255)                                            ttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCgtag                                                                                                   <  2:13433/141‑1 (MQ=255)                                             tttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCgtagt                                                                                                  <  1:964520/141‑1 (MQ=255)                                              ttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCgtagta                                                                                                 >  1:298941/1‑141 (MQ=255)                                               tCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTaa                                                                                                >  1:371245/1‑141 (MQ=255)                                                         tatTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa                                                                                      <  2:63560/141‑1 (MQ=255)                                                            ttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                                                                   >  1:543368/1‑141 (MQ=255)                                                            ttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                                                                   >  1:654346/1‑141 (MQ=255)                                                              ataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAc                                                                                 <  2:896925/141‑1 (MQ=255)                                                                   tataATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                                                                            <  2:501537/141‑1 (MQ=255)                                                                   tataATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                                                                            <  2:717992/141‑1 (MQ=255)                                                                   tataATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAAACAAGCAAAAATCACGTGaa                                                                            <  2:854299/141‑1 (MQ=255)                                                                   tataATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAAGCATCGTAGTAATCGCGCGAAAATCACGTGaa                                                                            <  1:422419/141‑1 (MQ=255)                                                                   aataataAAAATTCATTACTATAAAGCCAAGATAATGTAGTCTTAATCGTTCTGAAATACAAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                                                                            <  2:766612/140‑1 (MQ=25)                                                                    ataATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                                                                           <  2:371245/141‑1 (MQ=255)                                                                          aaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCa                                                                     >  1:856713/1‑141 (MQ=255)                                                                           aaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAACATCACGTGGAATAATCag                                                                    >  2:915262/1‑141 (MQ=255)                                                                           aaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCag                                                                    <  1:778719/141‑1 (MQ=255)                                                                            aattaattAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga                                                                   <  2:158936/141‑1 (MQ=255)                                                                              ttaattaaTATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAgg                                                                 >  1:647279/1‑141 (MQ=255)                                                                              ttaattaaTATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAgg                                                                 <  1:391555/141‑1 (MQ=255)                                                                               taattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCACGCGAAAATCACGTGa                                                                             >  2:250939/1‑128 (MQ=255)                                                                               taattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCACGCGAAAATCACGTGa                                                                             <  1:250939/128‑1 (MQ=255)                                                                                aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa                                                               >  1:737607/1‑141 (MQ=255)                                                                                aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa                                                               <  1:348659/141‑1 (MQ=255)                                                                                aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa                                                               <  1:612804/141‑1 (MQ=255)                                                                                aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa                                                               >  1:819595/1‑141 (MQ=255)                                                                                aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa                                                               <  2:669059/141‑1 (MQ=255)                                                                                       atTAAGCCAGGATGATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg                                                        >  1:765081/1‑141 (MQ=255)                                                                                       atTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAGATATT‑CAGAGTAATCGTGTTAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg                                                        >  1:434926/1‑141 (MQ=25)                                                                                       atTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg                                                        <  1:643939/141‑1 (MQ=255)                                                                                         taaggaaGGATAATGTAGTCGTAACTGTTAAGAAATAAGAAAAATGTTGTGAAAATCACGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                      <  2:819595/135‑1 (MQ=14)                                                                                                   tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                            <  1:599669/141‑1 (MQ=255)                                                                                                       gTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAt                                        <  1:234262/141‑1 (MQ=255)                                                                                                          ggcTTAAACGTATTGAAATAAGAAAAATGTTGTAAAAATAAGGTGAAATAAT‑CAGAGAAAACGTTTGAAAACATCGTAATAATCGTGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc                                     <  2:430385/139‑1 (MQ=11)                                                                                                            cTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc                                   <  1:660550/141‑1 (MQ=255)                                                                                                            cTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc                                   <  1:935751/141‑1 (MQ=255)                                                                                                              aaaTCGTACTGAAATAAGAAAAATGTTTTAAAAATCGCGTGAAATAAT‑CAGAGGATTCGTTTGAAATAATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                 <  2:895319/140‑1 (MQ=14)                                                                                                                    ttCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcc                           >  2:144406/1‑140 (MQ=255)                                                                                                                    ttCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCa                           >  2:445473/1‑141 (MQ=255)                                                                                                                      cTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                         >  1:766220/1‑141 (MQ=255)                                                                                                                       tGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                        <  1:23781/141‑1 (MQ=255)                                                                                                                       tGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                        >  1:763437/1‑141 (MQ=255)                                                                                                                        gAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAGATCATCGTAGTAATCGCGCGAAAATCACGTg                       >  2:12452/1‑141 (MQ=255)                                                                                                                         aaaTACGAAAAATGTTATAGAATTCGAGTCAGATAATACAGA‑GAATAGTTTTAAGATATCCTAGTAATCCTGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGCAGTAATCGCGCGAAAATCACGTGa                      <  2:22142/141‑1 (MQ=9)                                                                                                                          aaTACGAAAAAGGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                     <  1:468412/141‑1 (MQ=255)                                                                                                                           aTACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                    <  1:476606/141‑1 (MQ=255)                                                                                                                             aCGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata                  >  2:527645/1‑141 (MQ=255)                                                                                                                             aCGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata                  >  1:70017/1‑141 (MQ=255)                                                                                                                             aCGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGAGCAATAATGAGCGGAATCGATCGACATCATCGGAGTAATCGCGCGAAAATCACGTGAaata                  >  1:273938/1‑141 (MQ=14)                                                                                                                                aaaaaTGTTGTAAAAATCGGGTGGGATAAT‑GAGAGGTTTCGTTTGAAAACATCGTAGTAATCGTGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc               <  2:647279/141‑1 (MQ=11)                                                                                                                                   aattgagtaaaaaTCGCGTGAAATAAT‑CAGATGAAACGTTTGAAAAAATCGTAGTAATGGTGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga            <  2:927662/131‑1 (MQ=11)                                                                                                                                   aaTGTTGTGAAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCaga            >  1:489424/1‑141 (MQ=21)                                                                                                                                    aTGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag           <  1:43944/141‑1 (MQ=40)                                                                                                                                    aTGTTGTGAAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCagag           <  2:489424/141‑1 (MQ=17)                                                                                                                                      gttgtGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATGACGTGAAATAATCAGGGGAATCGTTTGAAAGCATCGTAGTAATCGCGCGGAAATCAGATGATATAATAAGAGGa         >  2:400821/1‑141 (MQ=11)                                                                                                                                       ttgtGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa        <  1:207589/141‑1 (MQ=37)                                                                                                                                        tgtgGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGaa                                                                            <  2:166256/72‑1 (MQ=9)                                                                                                                                        tgtgGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                                                                            >  1:166256/1‑72 (MQ=255)                                                                                                                                        tgtgGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaaa       >  1:517354/1‑140 (MQ=37)                                                                                                                                        tgtgGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt       <  1:414885/141‑1 (MQ=35)                                                                                                                                         gtgGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCAGCGAGGGAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAGTCAGCGTAGTAATCGAGCGAAAAACACGTGACATAATTAGAGGaaac      >  2:339650/1‑139 (MQ=11)                                                                                                                                           ggAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGt    <  1:443950/141‑1 (MQ=33)                                                                                                                                             aaaTCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt  <  2:543368/141‑1 (MQ=32)                                                                                                                                             |                                                                                                                                              GTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAAT‑CAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTT  >  CP000730/52349‑52629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.