New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	811555 =	42 (1.100)	4 (0.110)	3/262	6.2	11.8%	intergenic (+160/‑117)	USA300HOU_0757/USA300HOU_0758	hypothetical protein/hypothetical protein
	?	CP000730	= 891954	20 (0.550)					intergenic (+21/‑370)	USA300HOU_0844/yusF	hypothetical protein/TOPRIM domain topiosmerase/primase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/811701‑811555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgagtTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGGCTTATGAAAACAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTT  <  CP000730/891954‑891816                                                                                                                                                                                                                                                                                                ATTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATAC                                                                                                                                                   >  2:408840/1‑141  TTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACA                                                                                                                                                  <  1:356247/141‑1           CTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTA                                                                                                                                         <  2:157789/141‑1           CTTAAAGTAAAATAGAACAATTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTA                                                                                                                                         <  2:19664/141‑1                                                                                 TTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTACTCATGTATTCCTATTT                                                                                                                        <  2:230474/88‑1                                                                                 TTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTACTCATGTATTCCTATTT                                                                                                                        >  1:230474/1‑88                                                                                                                                             ccgatcTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGGCTTATGAAAACAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACA       <  1:77627/135‑1                                                                                                                                             CATGAGTTTTCCTCATGTATTCCTATTTTTAAATACACATTAGCTGTGGCGTATGAAAACAGGCTGGGACATAAATCAATGTGCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACt       <  2:130559/141‑2                                                                                                                                                  GTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGGCTTATGAAAACAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTT  <  2:170238/141‑1                                                                                                                                                                                                                                                                                                ATTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/811701‑811555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgagtTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGGCTTATGAAAACAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTT  <  CP000730/891954‑891816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.