| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 811555 = | 42 (1.100) | 4 (0.110) | 3/262 | 6.2 | 11.8% | intergenic (+160/‑117) | USA300HOU_0757/USA300HOU_0758 | hypothetical protein/hypothetical protein |
| ? | CP000730 | = 891954 | 20 (0.550) | intergenic (+21/‑370) | USA300HOU_0844/yusF | hypothetical protein/TOPRIM domain topiosmerase/primase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTCTGTGTTGGGGCCCCGCTATAATTG > CP000730/891816‑892079 | aaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAAc > 2:170238/1‑141 (MQ=255) tGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTaaaagatcgg > 1:77627/1‑135 (MQ=255) agTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGCACATTGATTTATGTCCCAGCCTGTTTTCATACGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGGAAAACTCATg > 2:130559/2‑141 (MQ=255) tttCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTa > 2:357755/1‑141 (MQ=255) ttCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTaa > 2:348391/1‑141 (MQ=255) actactGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGaaa > 1:249254/1‑141 (MQ=255) aaCGTCGTAGAGCATCCAACATTAACTTAGGTCCCAGCCTTTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAATAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTAt > 2:75744/1‑141 (MQ=18) cTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGt > 1:77219/1‑141 (MQ=255) tAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTgggg < 1:160338/141‑1 (MQ=255) tAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTgggg < 1:51491/141‑1 (MQ=255) gCATAGAACATTGATTTATGTCCCAGCCTGTTTTTATTTTTTATAGCTAATGTGTATATAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATATCTTTATGtaaggtaaca > 2:185927/1‑132 (MQ=17) tCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTAcc > 2:193161/1‑141 (MQ=255) cATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCa < 1:318282/141‑1 (MQ=255) gCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGc > 2:38972/1‑141 (MQ=255) ccaccgttcaTGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATTCTAATTTCTAAAGAAAAAGTATTTCTTTATGTTTGGGTCCCTCCAACTTGCACATTATTATAAGCTTACTTTCCATCAGCt < 2:392578/132‑1 (MQ=17) cacaGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCtt > 1:66298/1‑141 (MQ=255) acaGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTc > 2:311589/1‑141 (MQ=255) tAATGTGTAGTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTCTgtgt < 2:171427/141‑1 (MQ=255) aaaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTCTGTGTTGGGGCCCCGCt < 1:164909/141‑1 (MQ=255) aaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTCTGTGTTGGGGCCCCGCta < 1:170238/141‑1 (MQ=255) aaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTCTGTGTTGGGGCCCCGCta > 1:61440/1‑141 (MQ=255) aGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTCTGTGTTGGGGCCCCGCTATAAtt > 2:211952/1‑141 (MQ=255) ggAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTCGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTCTGTGTTGGGGCCCCGCTATAATTg > 1:332098/1‑141 (MQ=255) | AAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGTTTTCATAAGCCACAGCTAATGTGTATTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTCTGTGTTGGGGCCCCGCTATAATTG > CP000730/891816‑892079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |