| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 811555 = | 42 (1.100) | 4 (0.110) | 3/256 | 6.1 | 8.6% | intergenic (+160/‑117) | USA300HOU_0757/USA300HOU_0758 | hypothetical protein/hypothetical protein |
| ? | CP000730 | 2220727 = | 46 (1.300) | intergenic (‑378/+184) | USA300HOU_2091/atpC | hypothetical protein/F‑ATPase superfamily proton(H+)‑ or sodium (Na+)‑translocating F‑type ATPase epsilon subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/811701‑811555‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacatgagtTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTAAATCAATATAATTCAA > CP000730/2220727‑2220866 ATTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATAC > 2:408840/1‑141 TTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACA < 1:356247/141‑1 CTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTA < 2:157789/141‑1 CTTAAAGTAAAATAGAACAATTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTA < 2:19664/141‑1 TTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTACTCATGTATTCCTATTT > 1:230474/1‑88 TTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTACTCATGTATTCCTATTT < 2:230474/88‑1 ATACATGAGTAAAACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCATTCCCCCCTCTCATGTTTTGTATCTTTAAATCAAT > 1:230072/1‑141 tgcattAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTAAATCAATA < 2:388465/135‑1 ACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTTTTTCGCCCCTCTCATGTTTTGTATCTTTAAATCAATAT > 1:247776/1‑141 TGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTAAATCAATATAAT > 1:251454/1‑141 TGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTATTTTCTCCCTCTCATGTTTTGTATCTTTAAATCAATATAAT > 1:376310/1‑141 TTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTAAATCAATATAATTCAA > 1:268540/1‑141 ATTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/811701‑811555‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacatgagtTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTAAATCAATATAATTCAA > CP000730/2220727‑2220866 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |