New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	811555 =	42 (1.100)	4 (0.110)	3/256	6.1	8.6%	intergenic (+160/‑117)	USA300HOU_0757/USA300HOU_0758	hypothetical protein/hypothetical protein
	?	CP000730	2220727 =	46 (1.300)					intergenic (‑378/+184)	USA300HOU_2091/atpC	hypothetical protein/F‑ATPase superfamily proton(H+)‑ or sodium (Na+)‑translocating F‑type ATPase epsilon subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAAGTAAAACTATTCTTGGGAGTCGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTAAATCAATATAATTCAA  >  CP000730/2220591‑2220866                                                                                                                                         |                                                                                                                                            aaaaGTAAAACTATTCTTGGGAGTCGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTATAAATTAGTATTTCTTATACATGAGTTTTAc                                                                                                                                         >  2:279031/1‑141 (MQ=255) aaaaGTAAAACTATTCTTGGGAGTCGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTAc                                                                                                                                         >  2:81239/1‑141 (MQ=255)     gTAAAACTATTCTTGGGAGTCGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCAt                                                                                                                                     >  1:172959/1‑141 (MQ=255)        aaaCTATTCTTGGGAGTCGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTa                                                                                                                                  <  2:328425/141‑1 (MQ=255)          aCTATTCTTGGGAGTCGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTAtt                                                                                                                                >  2:257596/1‑141 (MQ=255)           cTATTCTTGGGAGTCGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTc                                                                                                                               >  2:31783/1‑141 (MQ=255)             aTTCTTGGGAGTCGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCt                                                                                                                             <  1:241270/141‑1 (MQ=255)                    ggAGTCGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTa                                                                                                                      <  2:172959/141‑1 (MQ=255)                     gAGTCGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTaa                                                                                                                     <  1:411276/141‑1 (MQ=255)                         cGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATac                                                                                                                 <  2:1814/141‑1 (MQ=255)                          ggACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATaca                                                                                                                >  2:230011/1‑141 (MQ=255)                              aTAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACAtt                                                                                                            <  1:63701/141‑1 (MQ=255)                                aaaTCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAg                                                                                                          >  2:129608/1‑141 (MQ=255)                                 aaTCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACTAAAAGCAATACTTTTTCTTTAGTAATTAGTATTTCTGATACCTGAGGTTTACTCATGTATTCCTCTGTTTAAATACACATGAGc                                                                                                         <  2:267499/141‑1 (MQ=255)                                 aaTCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGc                                                                                                         >  2:167151/1‑141 (MQ=255)                                 aaTCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGc                                                                                                         <  2:26712/141‑1 (MQ=255)                                    cAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACCGGGCCCCAACATAAAGAAATCATTTTTCTTTAGAAATCAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATCGACATTAGCtgt                                                                                                      >  2:393688/1‑141 (MQ=18)                                      aTGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGTGTTTTACTCATGTATTCCTATTTTTCAATACACATTAGCTgagt                                                                                                    >  2:55529/1‑141 (MQ=255)                                       tGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGtt                                                                                                   <  2:259722/141‑1 (MQ=255)                                        gTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCTCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGttt                                                                                                  <  2:385491/141‑1 (MQ=255)                                         tCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTa                                                                                                 >  1:294595/1‑141 (MQ=255)                                           tAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAAt                                                                                               <  2:23897/141‑1 (MQ=255)                                           tAGACTCTATAGTGTTGTATGTCGGAGTAGTTGACGGGGCCCCAACATAAAGAAATACCTTATCTTAAAAAATTACTATTTCTTATACATGAGATTTACTCCTGTATTCCTATTTCTACCTACCCATTAGCTGTGTTTAAt                                                                                               <  2:414153/141‑1 (MQ=17)                                            aGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATg                                                                                              >  2:321010/1‑141 (MQ=255)                                                  tataGTGTTGTATTTGGCAGTAGTTGACGGGGACCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAg                                                                                        >  2:349295/1‑141 (MQ=255)                                                           gtATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTTTTTTTTTTTTAATGTTAATAATACGTGAGGTTTTCTCATTCTCTCCTATTTTTAAATCCTCATTAGCTGTGTTTAATTATAAAGAACCACTAc                                                                               >  2:355654/1‑141 (MQ=16)                                                           gtATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACtactac                                                                               >  1:348306/1‑141 (MQ=255)                                                                tGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTAcatcat                                                                          <  2:179168/141‑1 (MQ=255)                                                                 ggCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATa                                                                         >  1:152421/1‑141 (MQ=255)                                                                     gtagtTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATc                                                                     >  1:265173/1‑141 (MQ=255)                                                                     gtagtTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATc                                                                     >  1:111696/1‑141 (MQ=255)                                                                       agtTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGATGTCTTTAATGATAAAGAACCACTACATCATAAATCtt                                                                   >  1:5219/1‑141 (MQ=255)                                                                           gACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAAt                                                               >  1:282509/1‑141 (MQ=255)                                                                                          tAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAAtt                                                >  1:286655/1‑141 (MQ=255)                                                                                            aaGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAAttcc                                              >  2:152308/1‑141 (MQ=255)                                                                                            aaGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAAttcc                                              >  2:233132/1‑141 (MQ=255)                                                                                             aGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAAttcct                                             >  1:79084/1‑141 (MQ=255)                                                                                                   aCTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCATTTCCTTccccc                                       >  1:256311/1‑141 (MQ=255)                                                                                                    cTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTcccccc                                      <  2:118151/141‑1 (MQ=255)                                                                                                    cTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTcccccc                                      <  2:323120/141‑1 (MQ=255)                                                                                                              tttttttAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACAAATTAGCTGTGTTTTATTTTAATTTATTACTACTTTATAATTCTTTATTGGTTTTTTCTCTATTTTTTCCCCCCTCTATTGttt                            >  2:35022/6‑141 (MQ=9)                                                                                                                 aaTTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGt                         <  1:46992/141‑1 (MQ=255)                                                                                                                   ttAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTAt                       >  1:133443/1‑141 (MQ=255)                                                                                                                         tttCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTaa                 >  2:409674/1‑141 (MQ=255)                                                                                                                         tttCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTaa                 <  2:152421/141‑1 (MQ=255)                                                                                                                           tCTTATACATGAGTTTTACTCATGTATTCCTATTTTTTTTTTTTTTTTTTTTTTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCATTTCCTTCCCCCCTCTCATGTTTTTTATCTTTAAAt               >  2:124052/1‑141 (MQ=21)                                                                                                                               ataCATGAGTAAAACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCATTCCCCCCTCTCATGTTTTGTATCTTTAAATCAat           >  1:230072/1‑141 (MQ=255)                                                                                                                                tgcattaGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTAAATCAata          <  2:388465/135‑1 (MQ=255)                                                                                                                                 aCATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTTTTTCGCCCCTCTCATGTTTTGTATCTTTAAATCAatat         >  1:247776/1‑141 (MQ=255)                                                                                                                                    tGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTAAATCAATATAAt      >  1:251454/1‑141 (MQ=255)                                                                                                                                    tGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTATTTTCTCCCTCTCATGTTTTGTATCTTTAAATCAATATAAt      >  1:376310/1‑141 (MQ=255)                                                                                                                                        ttttACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTAAATCAATATAATTCaa  >  1:268540/1‑141 (MQ=255)                                                                                                                                         |                                                                                                                                            AAAAGTAAAACTATTCTTGGGAGTCGGACATAAATCAATGTCTAGACTCTATAGTGTTGTATTTGGCAGTAGTTGACGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATACATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGTTTAATGATAAAGAACCACTACATCATAAATCTTTAATGGTTCTTTATCAATTCCTTCCCCCCTCTCATGTTTTGTATCTTTAAATCAATATAATTCAA  >  CP000730/2220591‑2220866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.