New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1929559 =	54 (1.420)	4 (0.110)	4/264	5.6	7.2%	intergenic (‑642/‑526)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
	?	CP000730	1929585 =	52 (1.430)					intergenic (‑668/‑500)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATAGATATTGTTAATTTAAGAAAGTAGGCGATTTTATTATGACAAGAGAAAGAAGATCATTTAGTTCAGAGTTTAAGTTACAAATGGTTAGATTATATAAAAATGGTAAGCCTAGGAATGAAATTATACGCGAGTATGATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1929703‑1929559 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcaTTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAATTAACAATATCTATTCTCATAGAATTTGTCCAA  >  CP000730/1929585‑1929721                                                                                                                                                                                                                                                                                            AATAGATATTGTTAATTTAAGAAAGTAGGCGATTTTATTATGACAAGAGAAAGAAGATCATTTAGTTCAGAGTTTAAGTTACAAATGGTTAGATTATATAAAAATGGTAAGCCTAGGAATGAAATTATACGCGAGTATGAT                                                                                                                                               <  2:120504/141‑1    AGATATTGTTAATTTAAGAAAGTAGGCGATTTTATTATGACAAGAGAAAGAAGATCATTTAGTTCAGAGTTTAAGTTACAAATGGTTAGATTATATAAAAATGGTAAGCCTAGGAATGAAATTATACGCGAGTATGATTTC                                                                                                                                            >  2:109236/1‑141     GATATTGTTAATTTAAGAAAGTAGGCGATTTTATTATGACAAGAGAAAGAAGATCATTTAGTTCAGAGTTTAAGTTACAAATGGTTAGATTATATAAAAATGGTAAGCCTAGGAATGAAATTATACGCGAGTATGATTTCA                                                                                                                                           >  1:186271/1‑141                                                           CATTTAGTTCAGAGTTTAAGTTACAAATGGTTAGATTATATAAAAATGGTAAGCCTAGGAATGAAATTATACGCAAGTATGATTTGATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTTAA                                                                                     >  2:183268/1‑141                                                                   TCAGAGTTTAAGTTACAAATGGTTAGATTATATAAAAATGGTAAGCCTAGGAATGAAATTATACGCGAGTATGATTTCATTCCTAGGCTTACCATTTTT                                                                                                                       >  2:393349/1‑99                                                                   TCAGAGTTTAAGTTACAAATGGTTAGATTATATAAAAATGGTAAGCCTAGGAATGAAATTATACGCGAGTATGATTTCATTCCTAGGCTTACCATTTTT                                                                                                                       <  1:393349/99‑1                                                                                                                               ATACGCGAGTATGATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAATTAACAATATCTATTCTC                 >  1:401705/1‑141                                                                                                                                            ATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAATTAACAATATCTATTCTCATAGAATTTGTCC    <  1:337305/141‑1                                                                                                                                              TTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAATTAACAATATCTATTCTCATAGAATTTGTCCAA  >  2:216677/1‑141                                                                                                                                              TTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAATTAACAATATCTATTCTCATAGAATTTGTCCAA  <  1:216591/141‑1                                                                                                                                                                                                                                                                                            AATAGATATTGTTAATTTAAGAAAGTAGGCGATTTTATTATGACAAGAGAAAGAAGATCATTTAGTTCAGAGTTTAAGTTACAAATGGTTAGATTATATAAAAATGGTAAGCCTAGGAATGAAATTATACGCGAGTATGATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1929703‑1929559 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcaTTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAATTAACAATATCTATTCTCATAGAATTTGTCCAA  >  CP000730/1929585‑1929721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.