| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1929559 = | 54 (1.420) | 4 (0.110) | 4/264 | 5.6 | 7.2% | intergenic (‑642/‑526) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| ? | CP000730 | 1929585 = | 52 (1.430) | intergenic (‑668/‑500) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAACTTCTTTGCGTAATTTAATCAGCTCTTTTTCTTCATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAATTAACAATATC > CP000730/1929422‑1929699 | gAACTTCTTTGCGTAATTTAATCAGCTCTTTTTCTTCATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGaa < 2:368580/141‑1 (MQ=255) aCTTCTTTGCGTAATTTAATCAGCTCTTTTTCTTCATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAAt > 2:277385/1‑141 (MQ=255) aCTTCTTTGCGTAATTTAATCAGCTCTTTTTCTTCATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAAt < 1:295979/141‑1 (MQ=255) tcttTGCGTAATTTAATCAGCTCTTTTTCTTCATCCGATAAGTTATCTTGTTGATTGAATGTACCCGTTTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAAGCAt < 2:355059/141‑1 (MQ=255) tGCGTAATTTAATCAGCTCTTTTTCTTCATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTc > 2:375127/1‑141 (MQ=255) gTAATTTAATCAGCTCTTTTTCTTCATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTcgcg < 1:29789/141‑1 (MQ=255) tAATCGGCTATTTTTCTTCATCCGGTAAGTTATGTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATTATACGCGAGTATGAt < 2:227164/141‑1 (MQ=255) aaTCAGCTCTTTTTCTTCATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAAtt < 1:390863/141‑1 (MQ=255) aTCAGCTCTTTTTCTTCATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAAttt > 2:337305/1‑141 (MQ=255) ctTTTTCTTCATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCt > 2:9022/1‑141 (MQ=255) tttCTTCATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAgg > 1:54499/1‑141 (MQ=255) tcttcATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCt > 1:58500/1‑141 (MQ=255) cATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTAcc > 1:273366/1‑141 (MQ=255) tttttttAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCTCCTTTTACTAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCa > 2:179073/7‑141 (MQ=255) tCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCAt < 1:398431/141‑1 (MQ=255) ccGTTAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTCACCAtt > 2:25953/1‑141 (MQ=255) aTAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCAttttt < 1:277385/141‑1 (MQ=255) tCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATc < 1:301186/141‑1 (MQ=255) ttGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCt < 1:281270/121‑1 (MQ=255) ttGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCt > 2:281270/1‑121 (MQ=255) gggATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACAGTTTGTAACCGCCATTTACAAACGTGGAAGGTGTGAGATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAAcc > 1:7098/3‑141 (MQ=255) gTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAAcc > 1:54333/1‑141 (MQ=255) tGAATGTACCCGTGTTTTGATGTTGGTTGATGCATTTTCCTACTGGTTGTAACCGCTATTTACTTTCGTTGGAGGTGTTAATGCATTCTCGCGTATATTTTCATTCCTAGGCTTACCAGTTTTATATTGTCTAGCCGttta < 2:271873/141‑2 (MQ=255) gAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGt > 2:216591/1‑141 (MQ=255) aaTGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTa < 1:214792/141‑1 (MQ=255) tGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTaaa > 2:89052/1‑140 (MQ=255) tGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAAc > 1:255532/1‑141 (MQ=255) aCCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTa < 1:308383/141‑1 (MQ=255) tgtTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAActc < 2:58500/141‑1 (MQ=255) gATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACt > 1:342067/1‑141 (MQ=255) tGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTaa < 1:165958/141‑1 (MQ=255) tGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATg > 1:21683/1‑141 (MQ=255) tGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATg > 2:49194/1‑141 (MQ=255) gCTTTATCCATTTTCCTACATTTTATAACCACCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGa > 1:218506/1‑141 (MQ=255) tttATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGAtc < 2:338781/141‑1 (MQ=255) ttATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGAtct < 2:33228/141‑1 (MQ=255) tCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGAtcttct < 1:360752/141‑1 (MQ=255) tttCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTtctc < 1:114017/141‑1 (MQ=255) aCATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCa > 1:149446/1‑141 (MQ=255) aTTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCata < 1:131668/141‑1 (MQ=255) ataACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATCAATTAACTATCTGAACATTAACAAGTGAACTACATAGTCTTCTTTCTTTAGTAATaaaaaa > 1:140599/1‑141 (MQ=255) ataACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATaaa > 1:313406/1‑141 (MQ=255) ataACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATaaa > 1:230993/1‑141 (MQ=255) ccGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCg < 1:203907/141‑1 (MQ=255) cGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGc > 2:109543/1‑141 (MQ=255) tACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACttt > 2:344933/1‑141 (MQ=255) aCAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCGGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTc < 2:23106/141‑1 (MQ=255) cAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCt > 2:155178/1‑141 (MQ=255) aaaCGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCtt < 1:170797/141‑1 (MQ=255) aaCGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTa < 1:291860/141‑1 (MQ=255) cGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTaaa > 1:194534/1‑141 (MQ=255) tCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAAtt < 2:173945/141‑1 (MQ=255) aGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAATTAACa > 2:303517/1‑141 (MQ=255) ggTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAATTAACaa < 2:318732/141‑1 (MQ=255) tgAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAATTAACAATATc < 1:186271/141‑1 (MQ=255) | GAACTTCTTTGCGTAATTTAATCAGCTCTTTTTCTTCATCCGATAAGTTATCTTGGTGATTGAATGTACCCGTGTTTTGATGTTGCTTTATCCATTTTCCTACATTTTATAACCGCCATTTACAAACGTCGAAGGTGTGAAATCATACTCGCGTATAATTTCATTCCTAGGCTTACCATTTTTATATAATCTAACCATTTGTAACTTAAACTCTGAACTAAATGATCTTCTTTCTCTTGTCATAATAAAATCGCCTACTTTCTTAAATTAACAATATC > CP000730/1929422‑1929699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |