New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2201286	45 (1.180)	3 (0.090)	3/252	6.0	7.3%	intergenic (+16/+353)	kdpE/cshA	KDP operon transcriptional regulator/ATP‑dependent RNA helicase
	?	CP000730	= 2201313	35 (1.010)					intergenic (+43/+326)	kdpE/cshA	KDP operon transcriptional regulator/ATP‑dependent RNA helicase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGAAATGCCTAGTTTAAGAGTGCATATGACATCATTAAGACAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2201138‑2201286 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaaagatcACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATTTAATTATTTCTCTTTCCACTGCAACATTTGATAACCAATGCGTGGATGTGTTTTAATAATATCTTTTGCGTCCTCATGACATTGTGAAAGTTTTTGTC  <  CP000730/2201313‑2201176                                                                                                                                                                                                                                                                                                 TGAAATGCCTAGTTTAAGAGTGCATATGACATCATTAAGACAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAA                                                                                                                                                    <  1:51604/141‑1   cAATGCCTAGTTTAAGAGTGCATATGACATCATTAAGACAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAA                                                                                                                                                  >  1:316450/2‑141   AAATGCCTAGTTTAAGAGTGCATATGACATCATTAAGACAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAA                                                                                                                                                  <  1:306092/141‑1       GCCTAGTTTAAGAGTGCATATGACATCATTAAGACAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGA                                                                                                                                              >  2:132554/1‑141                                     AAGACAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCG                                                                                                                <  2:46185/141‑1                                                                                                 CATTGGTTATCAAATGTTCCAGTGGAAAGGGAAATAATTAAATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAG                                                                                                                  >  2:326444/1‑79                                                                                                 CATTGGTTATCAAATGTTCCAGTGGAAAGGGAAATAATTAAATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAG                                                                                                                  <  1:326444/79‑1                                                                                                                                                 AGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATTTAATTATTTCTCTTTCCACTGCAACATTTGATAACCAATGCGTGGATGTGTTTTAATAATATCTTTTGCGTCCTCATGACATTGTGAAAGTTTTTG    >  1:380741/1‑141                                                                                                                                                   ATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATTTAATTATTTCTCTTTCCACTGCAACATTTGATAACCAATGCGTGGATGTGTTTTAATAATATCTTTTGCGTCCTCATGACATTGTGAAAGTTTTTGTC  >  2:238896/1‑141                                                                                                                                                     CACTGCCAATCATTCGTTTAATGGCAGCGATCTTTT                                                                                                         >  1:411684/1‑36                                                                                                                                                     CACTGCCAATCATTCGTTTAATGGCAGCGATCTTTT                                                                                                         <  2:411684/36‑1                                                                                                                                                                                                                                                                                                 TGAAATGCCTAGTTTAAGAGTGCATATGACATCATTAAGACAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2201138‑2201286 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaaagatcACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATTTAATTATTTCTCTTTCCACTGCAACATTTGATAACCAATGCGTGGATGTGTTTTAATAATATCTTTTGCGTCCTCATGACATTGTGAAAGTTTTTGTC  <  CP000730/2201313‑2201176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.