New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2201286	45 (1.180)	3 (0.090)	3/252	6.0	7.3%	intergenic (+16/+353)	kdpE/cshA	KDP operon transcriptional regulator/ATP‑dependent RNA helicase
	?	CP000730	= 2201313	35 (1.010)					intergenic (+43/+326)	kdpE/cshA	KDP operon transcriptional regulator/ATP‑dependent RNA helicase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGACAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCGATTATTCTTAATTTAAAAATAGTTCT  >  CP000730/2201175‑2201450                                                                                                                                             |                                                                                                                                          aGACAAAAACGTTCACACTGTCAATAGAACGAAAAAGATAATATTAAACCACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt                                                                                                                                           <  2:163566/141‑1 (MQ=255)  gACAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGAt                                                                                                                                        <  2:238896/141‑1 (MQ=255)    cAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCt                                                                                                                                      <  1:380741/141‑1 (MQ=255)              cacaATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATAtt                                                                                                                            <  2:18935/141‑1 (MQ=255)                    gTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt                                                                                                                      >  2:197389/1‑141 (MQ=255)                            gACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttattta                                                                                                              >  1:105460/1‑141 (MQ=255)                               gCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATcg                                                                                                           <  1:325018/141‑1 (MQ=255)                               gCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATcg                                                                                                           <  2:184769/141‑1 (MQ=255)                                  aaaGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCgcgc                                                                                                        <  2:322308/141‑1 (MQ=255)                                  aaaGATATTATAAAAACACATCCACGCATTGGTAATCAACAGTGCCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCAGTAAACGAATGATTGGCAGTGATCTTTTGTATATTCAACTTATTATTTATCgcgc                                                                                                        >  2:244837/1‑141 (MQ=255)                                         ttattaAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATAAAAT‑‑AAAAAAAATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCAcaaaaa                                                                                                 <  2:305885/141‑6 (MQ=255)                                          tattaAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGt                                                                                                >  1:73133/1‑141 (MQ=255)                                                aaCACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaa                                                                                          >  2:97838/1‑141 (MQ=255)                                                   acaTCCACGCATTGGTTATAAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaaa                                                                                       >  1:303794/1‑141 (MQ=255)                                                         aCGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTa                                                                                 <  1:181269/141‑1 (MQ=255)                                                          cGCAGTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTAt                                                                                <  1:251734/141‑1 (MQ=255)                                                           gCATTGGTTATGAAATGTTGCAGTGGAAAGAGAAATTATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTAtt                                                                               <  2:232131/141‑1 (MQ=255)                                                                ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtttt                                                                          >  2:19210/1‑141 (MQ=255)                                                                 gTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGttttt                                                                         >  1:25309/1‑141 (MQ=255)                                                                      cAAATATTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTTAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATaa                                                                    <  2:12070/141‑1 (MQ=255)                                                                              gCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTATCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGa                                                            >  1:352351/1‑141 (MQ=255)                                                                                aGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGCACATGATa                                                          >  2:235144/1‑141 (MQ=255)                                                                                 gTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATTATTGGCATTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc                                                         <  1:245207/141‑1 (MQ=255)                                                                                 gTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc                                                         <  2:38947/141‑1 (MQ=255)                                                                                   ggAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTg                                                       >  1:348619/1‑141 (MQ=255)                                                                                        gagaAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTCATCTTTTTTATATTCAACTAATTATTTATCGCTCACTAGCGTCATCAAAATGTCCTATTGTTTTTTATAAGAACATAATACTGTAAtt                                                  >  2:378878/1‑141 (MQ=255)                                                                                                    aat‑‑aaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGttta                                      <  2:115100/141‑1 (MQ=255)                                                                                                           aaaaGATCGCTGCCATTAAACGAATGATTGGCAGTg                                                                                                                                          >  2:411684/1‑36 (MQ=255)                                                                                                           aaaaGATCGCTGCCATTAAACGAATGATTGGCAGTg                                                                                                                                          <  1:411684/36‑1 (MQ=255)                                                                                                           aaaaGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTttatttat                                 <  1:124154/141‑1 (MQ=255)                                                                                                                         aTTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCGATTATTCtt                   <  1:333693/141‑1 (MQ=255)                                                                                                                         aTTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCGATTATTCtt                   <  1:123094/141‑1 (MQ=255)                                                                                                                         aTTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCGATTATTCtt                   >  1:93565/1‑141 (MQ=255)                                                                                                                                gAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCTATTATTCTTAATTTaa            >  2:212114/1‑141 (MQ=255)                                                                                                                                 aaTGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCGATTATTCTTAATTTaaa           >  2:128686/1‑141 (MQ=255)                                                                                                                                   tGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCGATTATTCTTAATTTaaaaa         <  2:199759/141‑1 (MQ=255)                                                                                                                                     aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCGATTATTCTTAATTTAAAAATa       >  2:219047/1‑141 (MQ=255)                                                                                                                                      ttGGCAGAGATCTTTTTTATATTCAACTTATTATTTATCGCGAAAAAAAAAAAAAAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCGATTATTCTTAATTTAAAAATAg      <  2:104873/141‑1 (MQ=255)                                                                                                                                        ggCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCGATTATTCTTAATTTAAAAATAGtt    >  2:291540/1‑141 (MQ=255)                                                                                                                                          cAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCGATTATTCTTAATTTAAAAATAGTTCt  <  1:191932/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                          AGACAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT‑‑AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATTTATGTTCGATTATTCTTAATTTAAAAATAGTTCT  >  CP000730/2201175‑2201450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.