New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	811555 =	42 (1.100)	4 (0.110)	3/262	6.2	10.1%	intergenic (+160/‑117)	USA300HOU_0757/USA300HOU_0758	hypothetical protein/hypothetical protein
	?	CP000730	= 848296	31 (0.860)					intergenic (+301/+73)	trxB1/USA300HOU_0793	thioredoxin‑disulfide reductase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAACAATATTGTGCAAGTTGGCGGGGCCCCAACATAAAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAGTGTTCTATTTTACTTTAAGTAA  >  CP000730/811415‑811694                                                                                                                                             |                                                                                                                                            tAACAATATTGTGCAAGTTGGCGGGGCCCCAACATAAAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTa                                                                                                                                             >  2:93089/1‑141 (MQ=255)          tgtgCAAGTTGGCGGGGCCCCAACATAAAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTAt                                                                                                                                    >  2:85980/1‑141 (MQ=255)             gCAAGTTGGCGGGGCCCCAACATAAAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTcc                                                                                                                                 <  1:392306/141‑1 (MQ=255)                          gCCCCAACATAAAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTac                                                                                                                    >  2:130673/1‑141 (MQ=255)                              cAACATAAAAGCAGGCGGAAAGTCAGATAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACAt                                                                                                                <  2:262880/141‑1 (MQ=255)                               aaCATAAAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACAtt                                                                                                               >  1:19231/1‑141 (MQ=255)                                  aTAAAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGc                                                                                                            <  2:152635/141‑1 (MQ=255)                                          aGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTa                                                                                                    >  1:314727/1‑141 (MQ=255)                                            gCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGAGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAAt                                                                                                  <  2:322670/141‑1 (MQ=255)                                               gAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATTTATTCCTCTTTCTCAGTACACATTAGCTGAGGCTAATGtt                                                                                               >  2:299516/1‑141 (MQ=255)                                                    tCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGaa                                                                                          <  2:37297/141‑1 (MQ=255)                                                     cAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAAc                                                                                         >  2:202807/1‑141 (MQ=255)                                                     cAGCTAACAATATTGTGCAAGTTCGGGCGGGGCACCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAAc                                                                                         >  2:376778/1‑141 (MQ=255)                                                        cTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCac                                                                                      <  2:218134/141‑1 (MQ=255)                                                            cAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCactact                                                                                  <  1:239791/141‑1 (MQ=255)                                                                     gCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTGATGTTAAGAACCACTACTTaatcaatc                                                                         <  2:327698/141‑1 (MQ=255)                                                                             gggcgggGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATtagtag                                                                 >  2:337647/1‑141 (MQ=255)                                                                               gcgggGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGtt                                                               <  1:236364/141‑1 (MQ=255)                                                                                cgggGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGttt                                                              >  2:411949/1‑141 (MQ=255)                                                                                cgggGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGttt                                                              >  1:256470/1‑141 (MQ=255)                                                                                 ggggCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGtttt                                                             <  2:242992/141‑1 (MQ=255)                                                                                 ggggCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGtttt                                                             <  2:48460/141‑1 (MQ=255)                                                                                       ccAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCAt                                                       >  1:206479/1‑141 (MQ=255)                                                                                         aaCATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCAttt                                                     >  2:376590/1‑141 (MQ=255)                                                                                             tAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCAc                                                 >  2:156099/1‑141 (MQ=255)                                                                                              aaaGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACt                                                <  1:198857/141‑1 (MQ=255)                                                                                                aGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTAt                                              >  2:194159/1‑141 (MQ=255)                                                                                                      aCTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCaa                                        >  1:58902/1‑140 (MQ=255)                                                                                                          tttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACAt                                    <  2:245605/141‑1 (MQ=255)                                                                                                           ttCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATc                                   <  2:117213/141‑1 (MQ=255)                                                                                                            tCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCa                                  <  2:330920/141‑1 (MQ=255)                                                                                                                        tATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAgtg                      >  2:277827/1‑141 (MQ=255)                                                                                                                         aTCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAgtgt                     <  2:32679/141‑1 (MQ=255)                                                                                                                         aTCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAgtgt                     <  1:397575/141‑1 (MQ=255)                                                                                                                         aTCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAgtgt                     >  1:41310/1‑141 (MQ=255)                                                                                                                         aTCACTTCCACATGAGNTTTACTCATGTANTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAgtgt                     >  1:266841/1‑141 (MQ=255)                                                                                                                            aCTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAGTGTTCt                  >  2:47158/1‑141 (MQ=255)                                                                                                                            aCTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAGTGTTCt                  <  2:107034/141‑1 (MQ=255)                                                                                                                             cTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAGTATTCTa                 >  2:252064/1‑141 (MQ=255)                                                                                                                               tCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAGTGTTCTAtt               <  1:130673/141‑1 (MQ=255)                                                                                                                                         ttttACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAACATCTTAAGTGTTCTATTTTACTTTAAg     <  1:85980/141‑1 (MQ=255)                                                                                                                                         taaaaCTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAATTGTTCTATTTTACTTTAAg     >  2:19664/5‑141 (MQ=255)                                                                                                                                         taaaaCTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAGTGTTCTATTTTACTTTAAg     >  2:157789/5‑141 (MQ=255)                                                                                                                                            tACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACCATTCCCAGACATCAAAATCTTAAGTGTTCTATTTTACTTTAAGTaa  <  1:337647/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            TAACAATATTGTGCAAGTTGGCGGGGCCCCAACATAAAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTCGGGCGGGGCCCCAACATAAAGAAAAACTTTTTCCTTTAGAAATTATCACTTCCACATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGAGGCTAATGTTAAGAACCACTACTTAATCAATCATTAGTAGTTTTTATCATTTCCACTATTCCCAGACATCAAAATCTTAAGTGTTCTATTTTACTTTAAGTAA  >  CP000730/811415‑811694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.