New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	811555 =	42 (1.100)	4 (0.110)	3/262	6.2	10.1%	intergenic (+160/‑117)	USA300HOU_0757/USA300HOU_0758	hypothetical protein/hypothetical protein
	?	CP000730	= 848296	31 (0.860)					intergenic (+301/+73)	trxB1/USA300HOU_0793	thioredoxin‑disulfide reductase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATGTTATATTAAACTTATAACTTTATGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATT  >  CP000730/848163‑848429                                                                                                                                      |                                                                                                                                       tatGTTATATTAAACTTATAACTTTATGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATg                                                                                                                                 <  2:207736/141‑1 (MQ=255)          ttAAACTTATAACTTTATGGGAGTGGGACAGAAATGATAAAGAGACACTAATGATTTATTATGTAGTGGTTTTTAAACATTAGCCAGAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAGCTCATGCATAAGaaa                                                                                                                        <  2:100930/141‑1 (MQ=255)              aCTTATAACTTTATGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACt                                                                                                                    <  2:383227/141‑1 (MQ=255)                       tttATGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCtat                                                                                                           <  1:370886/141‑1 (MQ=37)                         tATGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAg                                                                                                         >  2:52214/1‑141 (MQ=35)                         tATGGGAGTGGGAAAGAAATGATAAAGGGACACTAATGATTTATTATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAg                                                                                                         <  2:411669/141‑1 (MQ=255)                            gggAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGaaa                                                                                                      <  1:143539/141‑1 (MQ=32)                                gTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGt                                                                                                  >  1:262306/1‑141 (MQ=32)                                  gggACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTAt                                                                                                <  1:188217/141‑1 (MQ=32)                                   ggACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTAtt                                                                                               <  1:373308/141‑1 (MQ=32)                                                  agagCCACTAATGATTTATTATGTAGTGGTTCTTAGACATTAGCCACCGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTCATCGTTGTcc                                                                                >  2:273596/1‑141 (MQ=255)                                                                 ttattaTGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGcac                                                                >  1:309514/1‑141 (MQ=255)                                                                       tGTAGTGGTTATTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTAAAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACattatt                                                          <  2:350630/141‑1 (MQ=255)                                                                        gTAGTGGTTCTTAAACATTAGGCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGACATGCTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCCCCCCCAACTTGCACattatt                                                          <  2:214421/141‑1 (MQ=14)                                                                            tGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAg                                                     >  1:74375/1‑141 (MQ=255)                                                                                 cTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGAc                                                <  2:241896/141‑1 (MQ=255)                                                                                      aCATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTcc                                           <  2:364077/141‑1 (MQ=40)                                                                                       cATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCg                                          <  1:19195/141‑1 (MQ=255)                                                                                       cATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCg                                          <  1:291115/141‑1 (MQ=255)                                                                                         ttAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGcc                                        <  1:52214/141‑1 (MQ=255)                                                                                          tAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCa                                       >  2:173668/1‑141 (MQ=255)                                                                                             ccACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCt                                    >  1:145016/1‑141 (MQ=255)                                                                                                 aGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCtg                                >  2:278354/1‑141 (MQ=255)                                                                                                  gCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCtgt                               <  2:318144/141‑1 (MQ=255)                                                                                                      aTGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTg                           >  1:355017/1‑141 (MQ=255)                                                                                                       tgtgTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTgg                          <  1:137099/141‑1 (MQ=255)                                                                                                              ttAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCACCg                   <  2:355017/141‑1 (MQ=255)                                                                                                                  aaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCaa               >  1:244801/1‑141 (MQ=255)                                                                                                                  aaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCaa               >  1:228481/1‑141 (MQ=255)                                                                                                                    aTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCAACt             <  1:403912/141‑1 (MQ=255)                                                                                                                       ggAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGc          >  2:5229/1‑141 (MQ=255)                                                                                                                               tGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACattatt  <  2:35872/141‑1 (MQ=255)                                                                                                                                      |                                                                                                                                       TATGTTATATTAAACTTATAACTTTATGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTAAACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTACTTTATCGTTGTCCCA‑CCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATT  >  CP000730/848163‑848429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.