New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 836385 =110 (1.020)3 (0.030) 3/260 13.3 2.8% coding (776/840 nt) USA300HOU_0783 possible LysM family autolysin
?CP000730 836427 = 104 (1.040)coding (818/840 nt) USA300HOU_0783 possible LysM family autolysin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 111 total aligned reads displayed.

AAAAGTTGCAGGATTTAAAGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAGGATTTTTTGGTATCATTTAAT  >  CP000730/836245‑836525
                                                                                                                                            |                                                                                                                                            
aacaGTTGTAGGAATTAAAGCAGATAAAAGACCAGAACACGGCGATATTTTCCAAACAGCTGCTGGTCCATAGGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGc                                                                                                                                              <  2:720369/138‑1 (MQ=255)
aaaaGTTGCAGGATTTAAAGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGc                                                                                                                                              >  1:1039026/1‑141 (MQ=255)
aaaaGATGCAGGACTTAAAGTACATAAACCACCAGAAGTTGGCGCTATTTTCCTAACAGCTGCTGGTCCATATGGACACGTAGTTGTTGGGCAATCCTCAGACCATAATGTAACAATTACTGTTTCTGATATGAACTACGc                                                                                                                                              <  2:1161576/141‑1 (MQ=255)
 aaaGTTGCAGGATTTAAAGTAAATAAAACACCAGAATTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCt                                                                                                                                             <  2:245010/141‑1 (MQ=255)
    gTTGCAGGTTTTAAAGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGCTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGa                                                                                                                                          <  2:687352/141‑1 (MQ=255)
    gTTGCAGGATTTAAAGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGa                                                                                                                                          <  2:1209342/141‑1 (MQ=255)
    gTTGCAGGATTTAAAGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGa                                                                                                                                          <  2:71604/141‑1 (MQ=255)
         aGGATTTAAAGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTaa                                                                                                                                     >  1:747673/1‑141 (MQ=255)
         aGGATTTAAAGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTaa                                                                                                                                     >  1:747516/1‑141 (MQ=255)
           gATTTAAAGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTaaca                                                                                                                                   <  1:792597/141‑3 (MQ=255)
           gATTTAAAGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTaaca                                                                                                                                   <  1:793224/141‑3 (MQ=255)
           gATTTAAAGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCCGCTGGTAAATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATg                                                                                                                                   >  1:227117/1‑141 (MQ=255)
                 aaGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAAt                                                                                                                             <  2:1064810/141‑1 (MQ=255)
                     aGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTc                                                                                                                         <  1:942253/141‑1 (MQ=255)
                     aGATAAAACACCAGAAGTTGGCGCGTTTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTc                                                                                                                         <  2:805131/141‑1 (MQ=255)
                      gATAAAACACCAGAAGTTGGCGCTACTTTCCAAACAGCTGCTGGTCCATATTGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCa                                                                                                                        <  1:17490/141‑1 (MQ=255)
                        tAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGTTGGATTTAATGTTAAATCTTCAAg                                                                                                                      <  1:1087329/141‑1 (MQ=255)
                          aaaCACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGaa                                                                                                                    >  1:677362/1‑141 (MQ=255)
                               ccAGAAGTCGGCGCTATTTCCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAAtt                                                                                                               <  1:75729/141‑1 (MQ=255)
                                cAGAAGTTGGCGCTATTTTCCAAACAGCTGCTTGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAAttt                                                                                                              <  1:748642/141‑1 (MQ=255)
                                cAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAAttt                                                                                                              <  1:658221/141‑1 (MQ=255)
                                cAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAAttt                                                                                                              <  1:457118/141‑1 (MQ=255)
                                cAGAAGTTGGCGCTATTTTCCAAACAGCTGCTAGGCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAAAGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAAttt                                                                                                              <  2:604120/141‑1 (MQ=255)
                                cAGAAGTTGCCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGACATGGTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAAttt                                                                                                              <  1:275651/141‑1 (MQ=255)
                                cAGAAGTGGGCGCTATTTTCCACACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATTGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAAttt                                                                                                              <  1:975031/141‑1 (MQ=255)
                                   aaGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACACTTTTaa                                                                                                           >  2:724256/1‑141 (MQ=255)
                                   aaGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTaa                                                                                                           >  1:183163/1‑141 (MQ=255)
                                   aaGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTaa                                                                                                           >  2:68755/1‑141 (MQ=255)
                                   aaGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTaa                                                                                                           >  2:33222/1‑141 (MQ=255)
                                     gTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAAt                                                                                                         <  1:200002/141‑1 (MQ=255)
                                      ttGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATc                                                                                                        >  2:331570/1‑141 (MQ=255)
                                        ggCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCa                                                                                                      >  2:1040326/1‑141 (MQ=255)
                                         gcgcTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAg                                                                                                     >  1:943036/1‑141 (MQ=255)
                                           gcTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGa                                                                                                   >  1:1071785/1‑141 (MQ=255)
                                            cTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGaa                                                                                                  >  2:838224/1‑141 (MQ=255)
                                              tcttcccACACAGGTGCTGGTCCACAGTGACATGTTGGTGTTGTTGAATCTGTAAACCCTACTGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAATTCTTCAAGAACAATTTTAAATCCAGGaaaa                                                                                                <  1:453530/136‑1 (MQ=255)
                                              aTTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGaaaa                                                                                                <  1:552406/141‑1 (MQ=255)
                                               ttttCCAAACAGCTGCTGGTCCATATGGAGATGTTGGGGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAGATGAACTATGCTGGATTTAATGTTAAATCTTCACGAACAATTTTAAATCCAGGAAAat                                                                                               >  2:900399/1‑141 (MQ=255)
                                                 ttCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAatat                                                                                             <  2:298232/141‑1 (MQ=255)
                                                  tCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAAtata                                                                                            >  1:972768/1‑141 (MQ=255)
                                                    cAAACAGCGTCTGGTCTATATGGGCATGTTGGTGGTGTTGCACCTGTAAACCCTATTGGAACAATTACTGTTTCTGAAATGATCTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAAt                                                                                          <  2:212417/141‑1 (MQ=255)
                                                    cAAACAGCGGCTAGTCCATATGGACATGTTGGTTTTGTTTAATCTGCAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAAt                                                                                          <  2:1158350/141‑1 (MQ=255)
                                                     aaaCAGCTGCTGGTCCTTATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAAtt                                                                                         <  2:86227/141‑1 (MQ=255)
                                                     aaaCAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAAtt                                                                                         <  2:462931/141‑1 (MQ=255)
                                                     aaaCAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAACCCAGGAAAATATAAtt                                                                                         <  1:52202/141‑1 (MQ=255)
                                                     aaaCAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTAAAGAACAATTTTAAATCCAGGAAAATATAAtt                                                                                         <  1:451209/141‑1 (MQ=255)
                                                       aCAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATCGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTAc                                                                                       >  1:803326/1‑141 (MQ=255)
                                                          gctgctGGTCCATATGGACATGTTGGTGTTGTAGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGGTTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATc                                                                                    <  1:803656/141‑1 (MQ=255)
                                                          actgctgGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATc                                                                                    <  1:409490/140‑1 (MQ=255)
                                                           ctgctgGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTCTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATcc                                                                                   <  2:870654/141‑1 (MQ=255)
                                                            tgcggGTTCATATGGGTATGTTGGTGTTGTTGAATCTGTAAACCCTATTGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCa                                                                                  <  2:568818/141‑1 (MQ=255)
                                                             gctgGTTCGTATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCGGGAATATATAATTACATCCAc                                                                                 <  1:617594/141‑1 (MQ=255)
                                                             gctgGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCAc                                                                                 <  1:905071/141‑1 (MQ=255)
                                                             aagcgcccATATCGACACGTTATCCTTGTCGAATCTGTAAACCCTAATGGAACAATTACTGATACTGAAATGAACCATGCCGGATCTAATTTTAAATCTTCAACCACAACTTTAAATCCAGGAAAATATAATCACATCCAc                                                                                 <  2:983482/135‑1 (MQ=255)
                                                                 gTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAg                                                                             <  1:46635/141‑1 (MQ=255)
                                                                 gTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAg                                                                             <  1:64493/141‑1 (MQ=255)
                                                                          gACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGTAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATc                                                                    <  2:409663/141‑1 (MQ=255)
                                                                          gACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATc                                                                    >  2:985488/1‑141 (MQ=255)
                                                                          gACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATc                                                                    <  1:150817/141‑1 (MQ=255)
                                                                               gTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAACTAATATATcaagac                                                               <  1:629839/141‑1 (MQ=255)
                                                                                 tGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATcaagacaa                                                             <  1:68755/141‑1 (MQ=255)
                                                                                 tGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATcaagacaa                                                             <  1:33222/141‑1 (MQ=255)
                                                                                  ggTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATcaagacaag                                                            >  2:388856/1‑141 (MQ=255)
                                                                                  ggTGTGGTTGAATCTGTAAACCCTATTGGAACAATTACGGTTTCTGAAACGAACTATGCTAGATTTAATGTTAAATGTTCAAGAACAATGTTAGCGCCAGCAAAATATAATTACATCCACTAAGTAATATATcaagacaag                                                            <  2:284382/141‑1 (MQ=255)
                                                                                   gtgtTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATcaagacaaga                                                           <  2:747516/141‑1 (MQ=255)
                                                                                   gtgtTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATcaagacaaga                                                           <  2:747673/141‑1 (MQ=255)
                                                                                   gtgtTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATcaagacaaga                                                           <  1:906168/141‑1 (MQ=255)
                                                                                   gtgtTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATcaagacaaga                                                           <  1:284171/141‑1 (MQ=255)
                                                                                     gttgttGATTCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATCCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGCAATATATCAAGACAAGACt                                                         <  1:672181/141‑1 (MQ=255)
                                                                                      ttgttgAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTa                                                        <  2:1071785/141‑1 (MQ=255)
                                                                                        tttgAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATc                                                      <  2:1104173/140‑1 (MQ=255)
                                                                                           gAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCctc                                                   >  1:1036075/1‑141 (MQ=255)
                                                                                            aaTCTGTAAACCCTAATTGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCctct                                                  <  1:556362/141‑1 (MQ=255)
                                                                                            aaTCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCctct                                                  <  2:289504/141‑1 (MQ=255)
                                                                                            aaTCTGCAACCCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCctct                                                  <  2:15209/141‑1 (MQ=255)
                                                                                             aTCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCtt                                                 <  2:940373/141‑1 (MQ=255)
                                                                                                 gTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGcc                                             <  1:800845/141‑1 (MQ=255)
                                                                                                    aaCCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCATTTGGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGt                                          >  2:473637/1‑141 (MQ=255)
                                                                                                         tAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAg                                     <  1:331570/141‑1 (MQ=255)
                                                                                                         tAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAAGGTCCAACAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAg                                     <  1:333858/141‑1 (MQ=255)
                                                                                                            agaaaCAATTACTGGTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTaa                                  <  2:227117/138‑1 (MQ=255)
                                                                                                                    ttACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTga                          >  2:520042/1‑141 (MQ=255)
                                                                                                                    ttACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTga                          >  1:551733/1‑141 (MQ=255)
                                                                                                                     tACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGGTgag                         >  2:503410/1‑141 (MQ=255)
                                                                                                                      aCTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTgaga                        >  1:979274/1‑141 (MQ=255)
                                                                                                                       cTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGagag                       <  2:921356/141‑1 (MQ=255)
                                                                                                                        tGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAgg                      <  1:574546/141‑1 (MQ=255)
                                                                                                                        ggTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAgg                      <  1:361420/140‑1 (MQ=255)
                                                                                                                            tctcAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTTAGAGGAttt                  <  1:1175513/141‑1 (MQ=255)
                                                                                                                            tCTGAAATGAACTATGCTGAATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAGGAttt                  <  2:870762/141‑1 (MQ=255)
                                                                                                                              tGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAGGAttttt                <  1:995164/141‑1 (MQ=255)
                                                                                                                              tGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAGGAttttt                <  2:314997/141‑1 (MQ=255)
                                                                                                                                 aaTGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGCCAAGACTCTCCTCTCAGCCTGTTTCAGTAACAGGTAGAGAGGATTTTTTgg             >  2:81390/1‑141 (MQ=255)
                                                                                                                                   tGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGACAATATACTTACATCCACTAAGTAATATATCCAGACAAGACTATCCTCTTAGCCTGTTTAAGTACAAGGTTGCGAGGATTCTTTGGtt           >  2:18779/1‑140 (MQ=255)
                                                                                                                                   tGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAGGATTTTTTGGTa           >  1:922169/1‑141 (MQ=255)
                                                                                                                                   tGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAGGATTTTTTGGTa           <  2:536404/141‑1 (MQ=255)
                                                                                                                                         aTGCTGGATTTAATGTTAAATCGTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAGGATTTTTTGGTATCAttt     <  1:343970/141‑1 (MQ=255)
                                                                                                                                          tGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTCAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAGGATTTTTTGGTATCATTTa    <  1:514086/141‑1 (MQ=255)
                                                                                                                                          tGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAGGATTTTTTGGTATCATTTa    <  1:1053677/141‑1 (MQ=255)
                                                                                                                                            cTGTATTTAATGTTAAATCTTCAAGAACAAGTGTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGATAGGATTTTTTGGTATCATTTAAt  <  1:511853/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
AAAAGTTGCAGGATTTAAAGTAGATAAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGTCCATATGGACATGTTGGTGTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCTGAAATGAACTATGCTGGATTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAAGTAATATATCAAGACAAGACTATCCTCTTAGCCTGTTTAAGTAACAGGTTGAGAGGATTTTTTGGTATCATTTAAT  >  CP000730/836245‑836525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.