| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2121978 | 5 (0.060) | 6 (0.080) | 6/262 | 12.0 | 55.8% | coding (132/177 nt) | USA300HOU_1999 | hypothetical bacteriophage protein |
| ? | CP000730 | = 2122008 | NA (NA) | coding (102/177 nt) | USA300HOU_1999 | hypothetical bacteriophage protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CACATCATTTATCC‑AAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2121832‑2121978‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttaCCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT < CP000730/2122008‑2121869 CACATCATTTATCC‑AAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGA < 2:291474/141‑1CACATCATTTATCC‑AAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGA > 1:269093/1‑141 ATCATTTATCC‑AAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAG < 1:615642/141‑1 TCATTTATCC‑AAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGT < 1:407791/141‑1 CATTTATCC‑AAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGCCAGTg < 1:184819/141‑2 CATTTATCC‑AAAAGATAGAGTTGTCAGTATAGATCATATTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTT > 1:243595/1‑141 ATTTATCCAAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTT < 2:376315/141‑1 TCC‑AAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGCCAGTgataact < 2:13508/141‑8 ATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAG > 1:151697/1‑141 TGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTATCA‑‑CTGACAAGGTAGGACTT < 1:520130/141‑1 AGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTATCA‑‑CTGACAAGGTAGGACTTGCCAGTGAT < 1:515349/141‑1 GATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGA < 1:734922/141‑1 TCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATA < 2:680864/141‑1 CATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGA‑ATGCCAGTGATAACTGTCAACAAATAGCAAA < 2:151697/141‑1 GTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACAT < 1:156121/141‑1 TTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAGCATG < 2:76079/141‑1 TTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATG < 2:514523/141‑1 ACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT > 2:269674/1‑141 ACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT > 1:649596/1‑141 CACATCATTTATCC‑AAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2121832‑2121978‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttaCCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT < CP000730/2122008‑2121869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |