New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2121978	5 (0.060)	6 (0.080)	6/262	12.0	55.8%	coding (132/177 nt)	USA300HOU_1999	hypothetical bacteriophage protein
	?	CP000730	= 2122008	NA (NA)					coding (102/177 nt)	USA300HOU_1999	hypothetical bacteriophage protein
Rejected: Coverage evenness skew score above cutoff.

GTTATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTTCTCCTAA  >  CP000730/2121975‑2122148                                  |                                                                                                                                             gTTATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTa                                   <  1:411581/141‑1 (MQ=11)    aTCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtc                                >  2:209691/1‑141 (MQ=32)    aTCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtc                                >  2:666518/1‑141 (MQ=32)    aTCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtc                                <  2:674997/141‑1 (MQ=32)      cACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtcct                              <  2:167677/141‑1 (MQ=32)       aCTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtcctc                             >  2:113484/1‑141 (MQ=32)           gCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCttt                         >  1:570126/1‑141 (MQ=32)                tCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGa                    <  1:251794/141‑1 (MQ=33)                tCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGa                    <  1:578250/141‑1 (MQ=33)                tCCTACCTTGTCAGCTTGGCAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGa                    >  1:575243/1‑141 (MQ=17)                 ccTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAt                   >  1:109841/1‑141 (MQ=34)                 ccTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAt                   >  1:109858/1‑141 (MQ=34)                   tACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGACGTAAGAGACTCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtgt                 <  1:49104/141‑1 (MQ=25)                    aCCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtgtt                <  1:523824/141‑1 (MQ=35)                     ccTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGCTTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtgttt               <  2:767939/141‑1 (MQ=25)                     ccTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATGCCTCCTTTTAAGAtgttt               <  2:126383/141‑1 (MQ=21)                      cTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtgtttg              >  2:852502/1‑141 (MQ=35)                      cTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtgtttg              >  2:852499/1‑141 (MQ=37)                      cTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtgtttg              <  1:381075/141‑1 (MQ=37)                        tGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtgtttgtt            >  1:691546/1‑141 (MQ=38)                         gTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATgtttgttt           >  1:589104/1‑141 (MQ=39)                         gTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATgtttgttt           <  2:667330/141‑1 (MQ=39)                         gTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATgtttgttt           <  1:358079/141‑1 (MQ=39)                          tCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGtttt          <  2:321832/141‑1 (MQ=40)                          tCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGtttt          <  2:706651/141‑1 (MQ=40)                           cAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGttttt         <  1:550007/141‑1 (MQ=40)                            aGCTTGGTAACTGTATTGATTATTTACTTCATTTACTTATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTtc        <  1:484286/141‑1 (MQ=255)                            aGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTtc        <  1:278920/141‑1 (MQ=255)                             gCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGGTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTtct       >  1:391382/1‑141 (MQ=255)                                tGGTAACTGTATTGATTATTTACTTCTTTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTTCTCCt    <  2:745704/141‑1 (MQ=255)                                tGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTTCTCCt    <  2:560085/141‑1 (MQ=255)                                  gTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGtttttaggagaa  <  2:71690/141‑8 (MQ=255)                                  |                                                                                                                                             GTTATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTTCTCCTAA  >  CP000730/2121975‑2122148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.