| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 234750 | 44 (1.290) | 4 (0.130) | 4/256 | 4.8 | 8.8% | intergenic (+48/+217) | USA300HOU_0211/USA300HOU_0212 | hypothetical protein/oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
| ? | CP000730 | = 234763 | 42 (1.320) | intergenic (+61/+204) | USA300HOU_0211/USA300HOU_0212 | hypothetical protein/oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAACTTTGTGTTTTTTGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/234606‑234750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcccccgcCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAAACTTTGA < CP000730/234763‑234624 TAACTTTGTGTTTTTTGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCC < 2:26353/141‑1 ACTTTGTGTTTTTTGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGACTATTCTAATAAAATATAAATAATCCCCC < 1:365992/141‑1 CTTTGTGTTTTTTGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCG > 2:161545/1‑141 TGTGTTTTTTGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAACTATAAATAATCCCCCGCCc > 2:249455/1‑140 TGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCCACTATGTGAA < 2:137626/141‑1 TGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATA < 1:161545/141‑1 AAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGGTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATATTCCCCCTCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGA < 2:42265/141‑1 ATCCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATA > 1:336293/1‑141 CCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAAACT > 2:347017/1‑141 CGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGTTTGTGTCAACTTAGCTTATTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACATATTCAAATAAACTTT > 1:165161/1‑141 CCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGTTTTTTTTTACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAAACTTTGA > 2:77886/1‑141 TAACTTTGTGTTTTTTGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/234606‑234750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcccccgcCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAAACTTTGA < CP000730/234763‑234624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |