New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 234750	44 (1.290)	4 (0.130)	4/256	4.8	8.8%	intergenic (+48/+217)	USA300HOU_0211/USA300HOU_0212	hypothetical protein/oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein
	?	CP000730	= 234763	42 (1.320)					intergenic (+61/+204)	USA300HOU_0211/USA300HOU_0212	hypothetical protein/oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAATATAGTTAGTATGACAAAGTCATCTAACAT  >  CP000730/234624‑234900                                                                                                                                            |                                                                                                                                          tCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTAAAAAAAAACAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTgg                                                                                                                                          <  2:77886/141‑1 (MQ=255)   aaaGTTTATTTGAATATGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGAATAAGCTAAGTTGACACAAACAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCg                                                                                                                                        <  1:165161/141‑1 (MQ=255)     aGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCggg                                                                                                                                      <  2:347017/141‑1 (MQ=255)         tATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGAt                                                                                                                                  <  1:336293/141‑1 (MQ=255)           tttGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGAttt                                                                                                                                >  1:17281/1‑141 (MQ=255)             tGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTAt                                                                                                                              >  1:332210/1‑141 (MQ=255)                 tgtgTTAATTATGAAAGAAAAAGAGTCAGTGACGCTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTg                                                                                                                          <  2:283145/141‑1 (MQ=255)                  gtgtTAATTATGAAAGAAAAAGGGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTgg                                                                                                                         <  1:309040/141‑1 (MQ=255)                   tgtTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGc                                                                                                                        <  2:18430/141‑1 (MQ=255)                       aaTTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTa                                                                                                                    >  1:247906/1‑141 (MQ=255)                         ttATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTaaa                                                                                                                  <  2:150575/141‑1 (MQ=255)                                 gaaaAAGGGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCaa                                                                                                          <  2:270896/141‑1 (MQ=255)                                  aaaaaGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCaaa                                                                                                         >  2:163965/1‑141 (MQ=255)                                        agTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATgg                                                                                                   >  1:19908/1‑141 (MQ=255)                                          tAACTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAATATCTGAATATGCTAATAGAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAATTGCCCAAAGTATgggg                                                                                                 <  2:54163/141‑1 (MQ=255)                                           aaGTGACGAAAAATATACAGCGACTAAGGTAAGTTGACACAGTCAAAAATGTGCATATTCTAATAAAATATAAAAAATCCCCCGCACTTCACATAGTGGCCGGGGAATTATTCTTTCGTTCAGATGCCCCCAGTATggggg                                                                                                >  2:42571/1‑141 (MQ=255)                                                aCGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGAct                                                                                           >  1:182388/1‑141 (MQ=255)                                                 cGTTCAATATACATTGACTAAACTAAGTTGACTCCCTAAACAATGTTAATCTTCTAATATTATATAAATAGTCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTTAAGTGCCCAAAGTCTGGGGGTGActc                                                                                          <  2:47853/141‑1 (MQ=255)                                                  gTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGActct                                                                                         <  1:372612/141‑1 (MQ=255)                                                  gTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGActct                                                                                         <  1:218489/141‑1 (MQ=255)                                                     aaaTATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTaa                                                                                      <  1:372915/141‑1 (MQ=255)                                                         ataCATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCa                                                                                  >  2:363268/1‑141 (MQ=255)                                                            cATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGGGACTCTTAAATCATgg                                                                               >  1:317358/1‑141 (MQ=255)                                                             aTTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGTGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGc                                                                              <  2:87541/141‑1 (MQ=255)                                                              ttGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCa                                                                             >  1:202030/1‑141 (MQ=255)                                                                     agctaagTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCAcc                                                                      >  1:7781/1‑141 (MQ=255)                                                                      gctaagTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCt                                                                     <  1:363268/141‑1 (MQ=255)                                                                      actaagTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCt                                                                     >  1:283632/2‑141 (MQ=255)                                                                                 acacTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGAGGTTCTATTCCGGCTTTAAAATGCCCAAAGGATGGGGGTGGCGCTTAAAGCATGTCAAAGCACCTAAAACTTGata                                                          >  1:314233/1‑141 (MQ=255)                                                                                             cTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTg                                                                                              >  1:114988/1‑93 (MQ=255)                                                                                             cTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTg                                                                                              <  2:114988/93‑1 (MQ=255)                                                                                             cTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGcc                                              <  1:182373/141‑1 (MQ=255)                                                                                               gAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCt                                            <  1:159153/141‑1 (MQ=255)                                                                                                             aaTATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAata                              <  2:19412/141‑1 (MQ=255)                                                                                                             aaTATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAata                              <  2:212288/141‑1 (MQ=255)                                                                                                              atatAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAatat                             <  2:355356/141‑1 (MQ=255)                                                                                                                       atCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAATATAGTTAGTAt                    >  1:355703/1‑141 (MQ=255)                                                                                                                          ccccGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGcaca                                 >  2:156552/1‑125 (MQ=255)                                                                                                                          ccccGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGcaca                                 <  1:156552/125‑1 (MQ=255)                                                                                                                            ccGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAATATAGTTAGTATGACaa               <  1:338741/141‑1 (MQ=255)                                                                                                                             cGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAATATAGTTAGTATGACaaa              >  1:310398/1‑141 (MQ=255)                                                                                                                              gCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAATATAGTTAGTATGACAAAg             <  1:235926/141‑1 (MQ=255)                                                                                                                                    cacaTAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAATATAGTTAGTATGACAAAGTCATCt       >  1:215499/1‑141 (MQ=255)                                                                                                                                    cacaTAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAATATAGTTAGTATGACAAAGTCATCt       <  1:314005/141‑1 (MQ=255)                                                                                                                                         aGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAATATAGTTAGTATGACAAAGTCATCtaacat  <  2:76585/141‑1 (MQ=255)                                                                                                                                         aGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAATATAGTTAGTATGACAAAGTCATCtaacat  <  2:182388/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                          TCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCACTTCACATAGTGGCGGGGGATTTATTCTGGCGTTAAAATGCCCAAAGTATGGGGGTGACTCTTAAATCATGGCAAAGCACCTAAAACTTGATATGGTGCCGAGCCCTAACTTAGCACAATATAGTTAGTATGACAAAGTCATCTAACAT  >  CP000730/234624‑234900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.