New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	494152 =	35 (1.020)	4 (0.130)	4/258	4.8	12.6%	intergenic (+101/+68)	ybbJ/yibF	GNAT family acetyltransferase/hypothetical protein
	?	CP000730	494194 =	23 (0.720)					intergenic (+143/+26)	ybbJ/yibF	GNAT family acetyltransferase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGACCTGTTCATATTATGGCGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTAATCCAAGCCGTA  >  CP000730/494016‑494292                                                                                                                                         |                                                                                                                                             aGACCTGTTCATATTATGGCGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCg                                                                                                                                          >  1:333863/1‑141 (MQ=255)  gACCTGTTCATATTATGGCGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGa                                                                                                                                         <  2:291412/141‑1 (MQ=255)    ccTGTTCATATTATGGCGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTTTTATATTTCATCGTACAATTTACTATAGTAAAAAGCGAcc                                                                                                                                       >  2:357782/1‑141 (MQ=255)    ccTGTTCATATTATGGCGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGAcc                                                                                                                                       >  1:213222/1‑141 (MQ=255)            tattatGGCGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAAc                                                                                                                               >  1:357538/1‑141 (MQ=255)            tattatGGCGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAAc                                                                                                                               <  1:210983/141‑1 (MQ=255)             attatGGCGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGAGACCTAGTGAACa                                                                                                                              >  1:148944/1‑141 (MQ=255)              ttatGGCGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACaa                                                                                                                             >  1:344911/1‑141 (MQ=255)                atGGCGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTAAAGTAAAAAGCGACCTAGTGAACAAtt                                                                                                                           >  1:356539/1‑141 (MQ=255)                    cGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACa                                                                                                                       <  1:231654/141‑1 (MQ=255)                               aaataaatTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAg                                                                                                            <  1:26587/141‑1 (MQ=255)                               aaataaatTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAg                                                                                                            <  1:162422/141‑1 (MQ=255)                                aataaatTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAgg                                                                                                           <  2:369701/141‑1 (MQ=255)                                aataaagTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAgg                                                                                                           <  2:252457/141‑1 (MQ=255)                                    aattaaattTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTTTTTTATATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGc                                                                                                       >  2:215577/1‑141 (MQ=255)                                    aattaaattTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATAACCACAGGTCGc                                                                                                       >  2:79720/1‑141 (MQ=255)                                    aattaaattTAAAAGCATCTTTACTCATCGTCGACCACAACAACTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGc                                                                                                       <  1:345043/141‑1 (MQ=255)                                              aaaaGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTTTTCTTGATCATCGAACAATTTACTATAGTAATAAACGACATAGTGATCAATTTATAGATATCCACAGGATGcttaactttat                                                                                             >  2:339191/1‑138 (MQ=255)                                                     tCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATAtt                                                                                      >  1:359710/1‑141 (MQ=255)                                                     tCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATAtt                                                                                      >  1:27158/1‑141 (MQ=255)                                                              aTCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTTTTTTTTTTTTTCGGACAATTTACTATAGTAAAAAGTGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAATTTATATTGCTAGTTGc                                                                             >  2:12815/1‑141 (MQ=255)                                                                              aTTAATGATGAATAAAGGTGCTTTTTTTTTTTTTTTATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACt                                                             >  2:241405/1‑141 (MQ=255)                                                                               ttAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtc                                                            <  1:131592/141‑1 (MQ=255)                                                                                tAATGATGAATAAAGGTGCTTTTTGTTTTATATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtca                                                           >  2:9974/1‑141 (MQ=255)                                                                                    gatgaATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTcatcat                                                       <  2:357538/141‑1 (MQ=255)                                                                                           aaaGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcg                                                <  2:216034/141‑1 (MQ=255)                                                                                            aaGGTGCTTTTTTTTTTTTTTTTTCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcgc                                               >  2:114873/1‑141 (MQ=255)                                                                                              ggTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTg                                             <  2:135137/141‑1 (MQ=255)                                                                                                  cTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCga                                         >  1:228238/1‑141 (MQ=255)                                                                                                        gTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGt                                   >  2:270628/1‑141 (MQ=255)                                                                                                             tgATCATCAGACAATTTACTTTAGTAAAAGGCGACATAGTGAACAATTGACATATATACACAGGTCGCTTAATTAAAATTAAATTGATAGTTGCGATTAATTGATCGACTCATCATTTTTGCGCTGTCGAGATGGACtttt                              <  2:27158/140‑1 (MQ=255)                                                                                                                 catcGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTttatt                          <  1:105328/141‑1 (MQ=255)                                                                                                                   tcGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTaa                        >  1:44633/1‑141 (MQ=255)                                                                                                                      gACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTaaaaa                     <  1:272574/141‑1 (MQ=255)                                                                                                                               cTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTAAt            >  1:202504/1‑141 (MQ=255)                                                                                                                                         aaGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTAATCCAAGCCGTa  <  1:364647/141‑1 (MQ=255)                                                                                                                                         |                                                                                                                                             AGACCTGTTCATATTATGGCGTTAACTATAAAATAAATTAAATTTAAAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTAATCCAAGCCGTA  >  CP000730/494016‑494292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.