New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 503635158 (0.920)41 (0.260)
+TTTTACTAAT		 5/276 12.8 21.6% noncoding (90/93 nt) USA300HOU_t0003 tRNA‑Ser
?CP000730 = 1996883 161 (0.940)noncoding (1/76 nt) USA300HOU_t0035 tRNA‑Asp
Rejected: Coverage evenness skew score above cutoff.

GGAGGAATACCCAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/503546‑503635
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCATCATTACATTTTTATTATGGTTCAGTAGCTCAGTTGGTAGAGCAATGGATT  <  CP000730/1996883‑1996757
                                                                                          ||||||||||                                                                                                                               
GGAGGAATACCCAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCG                                                                                >  1:219077/1‑149
  acaagtcaCCAAGCCCGGCACACGGGCTGGGGCTCGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCG                                                                              <  1:389386/141‑1
     AATACCCAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGT                                                                           >  1:501528/1‑149
      ATACCCAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGGGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTT                                                                          <  2:52485/149‑1
       ccCCCAAGTCCGCCCGAGGGTATCCGTCTTGAAACCCGACGGCGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCGTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTC                                                                         <  2:481547/147‑1
       TACCCAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTC                                                                         <  1:602473/149‑1
        agcggcggCCGGGTGAAGGTATCGGTCTTGAAAACCGACAGGGGCTGAAGGGCTCGGGGGGGTTCGAATCCGTCTGCCGCCGTTTTACTAATGGTCCCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCG                                                                        <  2:498137/141‑1
         CCCAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGA                                                                       <  2:179317/149‑1
         CCCAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGA                                                                       <  2:1483568/149‑1
          CCAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTCGCTGCGCAAGGGGGTGCAAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGAT                                                                      >  1:1696291/1‑149
          CCAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGAT                                                                      <  1:723019/149‑1
          CCAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTAATAATGTATTTTTTTTGTAGCGGTTAACACGGCTGCCTGTCACGCAGGAGATCGCGGGTTCGAT                                                                      >  1:819708/1‑149
           cgAGTCCGGCTGAAGGGATCGGTCTGGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATT                                                                     <  1:960994/147‑1
           CAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATT                                                                     <  1:936824/149‑1
           CAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGCAGTGTAGCGGTTAACACGCCTGCCTGTCACGGACGAGTACGAGGGTTCGATT                                                                     >  1:1323542/1‑149
           CAAGTCCGGCTGAAGGGATCGGTCCTGAAACCCGACAGGGGCTTAACGGCTCGCGGGGGTTCGCATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATT                                                                     <  1:159776/149‑1
           CAAGCCCGGCTGAAGGGATCGGTTTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATT                                                                     <  1:73856/149‑1
                  GGCTGAAGGGATCGGTCTTGAAAACCGCCAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAAGGGTCTCGTAGTGAAGCCGTTAACGCGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCG                                                              <  1:1620065/149‑1
                       AAGGGATCGGTCTTGAAGACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACC                                                         <  1:842734/149‑1
                       AAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACC                                                         <  2:929225/149‑1
                        gGGGATGGGGCTCGAAAACCGCCCGGGGTTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCG                                                        <  2:536182/148‑1
                         ggtagcgacCTTGAGAACCGGCAGGGGTTTAACGGTTCGCGGGGGTTAGAAGCCCTATTCCTCCGTTTATCTAATGGTCTCGTCGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGC                                                       <  2:1027184/140‑1
                         GGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGCATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGC                                                       <  1:989385/149‑1
                         GGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTTTCGTAGGGGAGGGGTTAACCCGCCTGCCTGTCACGCCGGAGATCGGGGGGTCGGTTGGCGTCGAGcgcgc                                                       >  2:250415/1‑144
                         GGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGC                                                       <  1:199709/149‑1
                         GGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGC                                                       <  2:1044588/149‑1
                           gcTCGGTCTGGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTGCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCA                                                     <  2:1474558/147‑1
                           cttgGGTCTTTAACACCGCCTGGGGCTTAACGGCTGTCGGGGGTCCCGATCCCTTTTCCTCCGTTTTCCTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCA                                                     <  2:1286706/145‑1
                           GATCGGTCTTGAAAACCGCCAGGGGCGCAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGCTCGCGGGTTCGATTCCCGTCGAGACCGCCA                                                     <  1:853996/149‑1
                           GATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCA                                                     <  1:682566/149‑1
                           GATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCA                                                     <  2:92561/149‑1
                            ATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCAT                                                    <  2:513191/149‑1
                                  CTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTGGAGACCcgcctttaatt                                              >  1:667630/1‑138
                                  CTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGGTCGATTCCGGTAGAGGCCGCCActtcatt                                              >  1:1353992/1‑142
                                      AAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCG                                                                              <  1:974171/113‑1
                                      AAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCG                                                                              >  2:974171/1‑113
                                                                              ccttcctattCGTTTTTCTATGGGTCGCGTAGTGTAGCGGGTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCATCATTACATTTTTATTATGGTTCAGTAGCTCAGTTGGTAGAGCAATGGATT  <  2:995247/139‑1
                                                                                   TCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCATCATTAC                                              >  2:149854/1‑100
                                                                                   TCCTCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGGCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCATCATTAC                                              <  1:149854/100‑1
                                                                                      TCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCATCATTACATTTTTATTATGGTTCAGTAGCT                       >  1:501859/1‑120
                                                                                      TCCGTTTTACTAATGGTCTCGTAGTGTAGCGGTGAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCATCATTACATTTTTATTATGGTTCAGTAGCT                       <  2:501859/120‑1
                                                                                                   TGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAG                                                            >  2:1566466/1‑70
                                                                                                   TGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAG                                                            <  1:1566466/70‑1
                                                                                                   TGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAG                                                            >  1:1539089/1‑70
                                                                                                   TGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAG                                                            >  2:135363/1‑70
                                                                                                   TGGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAG                                                            <  2:1539089/70‑1
                                                                                          ||||||||||                                                                                                                               
GGAGGAATACCCAAGTCCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGGCTTAACGGCTCGCGGGGGTTCGAATCCCTCTTCCTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/503546‑503635
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTCTCGTAGTGTAGCGGTTAACACGCCTGCCTGTCACGCAGGAGATCGCGGGTTCGATTCCCGTCGAGACCGCCATCATTACATTTTTATTATGGTTCAGTAGCTCAGTTGGTAGAGCAATGGATT  <  CP000730/1996883‑1996757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.