New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2306141 =204 (1.190)7 (0.050) 4/262 13.1 3.6% coding (94/108 nt) USA300HOU_2165 hypothetical protein
?CP000730 2306185 = 195 (1.280)coding (50/108 nt) USA300HOU_2165 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 204 total aligned reads displayed.

AAATTAGACAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACAAAAGATGTGCCATC  >  CP000730/2305997‑2306287
                                                                                                                                                |                                                                                                                                                  
aaaTTAGACAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATaaaa                                                                                                                                                >  2:1257371/1‑149 (MQ=255)
  aTTAGACAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGGTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATaaaaaa                                                                                                                                              >  1:683817/1‑149 (MQ=255)
   ttAGACAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATaaaaaaa                                                                                                                                             <  2:1675100/149‑1 (MQ=255)
   ttAGACAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATAAATTAACTAAATAAATTGTATaaaaaaa                                                                                                                                             <  1:1041485/149‑1 (MQ=255)
      gACAGCAAAGATGTATCTAGAATCGGCTCGACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAAtca                                                                                                                                          >  1:234417/1‑149 (MQ=255)
       aCAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAAtcat                                                                                                                                         >  1:1306170/1‑149 (MQ=255)
       aCAGCAAAGATGTAACTGAAATCCGCTCAATGTTTGTGAAAACGAGTCGCGTTATGATCGATACTGAATACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTGTAAAAAaataat                                                                                                                                         >  2:835449/1‑149 (MQ=255)
         aGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGGTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAAtcattc                                                                                                                                       >  2:1070540/1‑149 (MQ=255)
             aaGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATgg                                                                                                                                   <  1:931369/149‑1 (MQ=255)
             aaGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATgg                                                                                                                                   <  1:953232/149‑1 (MQ=255)
                 tGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAg                                                                                                                               >  1:81310/1‑149 (MQ=255)
                      cTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTAAAATGACTTAACTGAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCtt                                                                                                                          >  2:141442/1‑149 (MQ=255)
                        aGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACAACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGGATAAAAAAATCATTCACGGTGCGGGCTTCa                                                                                                                        >  2:1098603/1‑149 (MQ=255)
                         aaagcGGCTCAACGTTTGGTAAAACTAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCat                                                                                                                       <  2:457376/145‑1 (MQ=255)
                          aaTCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATCAATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATCAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCatg                                                                                                                      >  2:153283/1‑149 (MQ=255)
                          aaTCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCatg                                                                                                                      >  1:1408380/1‑149 (MQ=255)
                                cTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGAt                                                                                                                >  1:120353/1‑149 (MQ=255)
                                  cAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGAttt                                                                                                              >  2:90996/1‑149 (MQ=255)
                                   aaCGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGACCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGAtttt                                                                                                             >  2:860319/1‑149 (MQ=255)
                                       tttGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGGGGGCTTCATGAATGAGTTTTTTa                                                                                                         >  2:1237137/1‑149 (MQ=255)
                                          ggTAAATCTAAGCGAGTTATTATCTATACTGAAGACAACGAATACGTTATATATAAACAAAATGAGCAAAAAGTTTACAATGAATTATCTAAATCATTTATATAAAAAAATCATTCATGGTGAGGGCTTCATGAATAATTTTTTTAAtt                                                                                                      <  2:288620/149‑1 (MQ=255)
                                              aaaCGAAGTGCGTTATTATCGATACTGGAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGAtt                                                                                                  <  1:694680/149‑1 (MQ=255)
                                                 cGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCaa                                                                                               >  1:1001386/1‑149 (MQ=255)
                                                       gcgTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCa                                                                                         <  2:1693735/149‑1 (MQ=255)
                                                         gTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGc                                                                                       <  1:1633688/149‑1 (MQ=255)
                                                              tatCGATACTGAAGACCACGAATACATTATTTATGCTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATaaa                                                                                  <  2:252156/149‑1 (MQ=255)
                                                               atagATACTGAAGACCACGAATACATTATGTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAAc                                                                                 <  2:1317473/146‑1 (MQ=255)
                                                               atCGATTCTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAAGGATTTTTTTAATTGATTCAACACCCAGCATAAAc                                                                                 <  2:1030465/149‑1 (MQ=255)
                                                               atCGACACTGAACACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAAc                                                                                 <  2:77032/149‑1 (MQ=255)
                                                               actgATACTGAAGACCACGAACACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAAc                                                                                 <  2:111069/146‑1 (MQ=255)
                                                                tCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGCCTTAACTAAAAAAATTGTATAATAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACa                                                                                >  1:404126/1‑149 (MQ=255)
                                                                tCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCACCATAAACa                                                                                >  1:1280586/1‑149 (MQ=255)
                                                                   aTACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACaaaa                                                                             >  1:97960/1‑148 (MQ=255)
                                                                   aTACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAAt                                                                             <  1:1449531/149‑1 (MQ=255)
                                                                   aTACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAAt                                                                             <  1:215970/149‑1 (MQ=255)
                                                                   aTACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAAt                                                                             >  1:866643/1‑149 (MQ=255)
                                                                   aTACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAAt                                                                             >  2:331588/1‑149 (MQ=255)
                                                                   aTACTGAAGACCACGAATACATTATTTATACTCAAAATGAACAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAAt                                                                             <  1:511715/149‑1 (MQ=255)
                                                                        gattgtcACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACaaa                                                                        <  2:423856/143‑1 (MQ=255)
                                                                        gAAGACCAGGAATACATTATTTATAATAAAAATGATCAAAAAGTTTACAATGAATTAACTAAATTAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACaaa                                                                        <  2:145186/149‑1 (MQ=255)
                                                                                    tACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCACAAACAAATACAAAAGGACAACTGtt                                                            <  1:1356930/149‑1 (MQ=255)
                                                                                      cATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTcc                                                          <  2:1629896/149‑1 (MQ=255)
                                                                                      cATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGAGTTTGTTAATTCATTCAACACCCAGCATAAACACAGACAAATGAACAACTGCTcc                                                          >  1:476881/1‑149 (MQ=255)
                                                                                       attattTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAACATAATCATGTTGATTTCTTAATGAATGATTTTTTTAATTGATTAAAAACCCAGTATAAACAAATACAAAAGGACAAATGttaca                                                         >  2:1559994/1‑146 (MQ=255)
                                                                                       attattTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTccc                                                         <  1:1095212/149‑1 (MQ=255)
                                                                                       attattTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTccc                                                         <  2:1366220/149‑1 (MQ=255)
                                                                                       attattTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTccc                                                         <  2:205976/149‑1 (MQ=255)
                                                                                        ttatttatACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCa                                                        <  1:1301555/149‑1 (MQ=255)
                                                                                          ctttatCCGCAAAAGGATCAAAAACTTCACAATGAATTAACTAAATAAATTTTATAAAAAAATCATTCAGGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAATAAATACAAAAGGACAACTGTTCCCATa                                                      <  1:589514/148‑1 (MQ=255)
                                                                                          atttatACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATa                                                      <  1:266914/149‑1 (MQ=255)
                                                                                           tttatACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATaa                                                     <  1:1719861/149‑1 (MQ=255)
                                                                                           tttatACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATaa                                                     <  1:989786/149‑1 (MQ=255)
                                                                                           tttatACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATaa                                                     >  1:1579068/1‑149 (MQ=255)
                                                                                           tttatACTAAAAAGGACTAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATaa                                                     <  2:1199491/149‑1 (MQ=255)
                                                                                           tttatAATCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATaa                                                     <  2:385326/149‑1 (MQ=255)
                                                                                               taCTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAGTAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCCACACCCAGCATAAACAAATACAAAAGGACAACTGTTacccaaatctt                                                 >  2:751313/1‑141 (MQ=255)
                                                                                               taCTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATCAtttt                                                 >  1:339741/1‑149 (MQ=255)
                                                                                               taCTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAAtttt                                                 >  1:1312005/1‑149 (MQ=255)
                                                                                               taCTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAAtttt                                                 >  1:901362/1‑149 (MQ=255)
                                                                                                   cAAAATGATCAAAAAGTTTACAATGAATTAACTAGATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACa                                             >  2:1067206/1‑149 (MQ=255)
                                                                                                      aaTGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGtt                                          >  1:1015027/1‑149 (MQ=255)
                                                                                                         gATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTTTGAAAAAAGCAGACGTCGTGACTGCTCCATCAATTAGTGTTTTAATTGATTCCACACACAACATTAACAAAAACAAAAGGACATCTGTTCCCATAATTTTATCAGTTGTc                                       <  2:615109/149‑1 (MQ=255)
                                                                                                         gATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTc                                       <  2:1284124/149‑1 (MQ=255)
                                                                                                           tCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCt                                     >  1:943027/1‑149 (MQ=255)
                                                                                                           tCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCt                                     <  1:1488398/149‑1 (MQ=255)
                                                                                                            cAAAAATTTTACAATGAATTAACTAAAGAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCtt                                    <  2:1014446/149‑1 (MQ=255)
                                                                                                            cAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAATGACAACTGTTCCCTTAATTTTAACAGTTGTCCtt                                    >  2:180421/1‑149 (MQ=255)
                                                                                                            cAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCtt                                    <  2:546841/149‑1 (MQ=255)
                                                                                                             aaaaaGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCttt                                   <  1:1223231/149‑1 (MQ=255)
                                                                                                             aaaaaGTCTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCttt                                   <  1:1625452/149‑1 (MQ=255)
                                                                                                                aaGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATCCAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTc                                <  1:72933/149‑1 (MQ=255)
                                                                                                                aaGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTc                                <  1:987934/149‑1 (MQ=255)
                                                                                                                aaGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTc                                <  1:534489/149‑1 (MQ=255)
                                                                                                                 aGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTca                               <  1:1614853/149‑1 (MQ=255)
                                                                                                                  gTTTACACTGAATTAACTAAATAAATTGTATAAAAAAGTCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACTACTTTCCCCAGAATTTTCACAGTTGTCCTTTTTtac                              <  2:779992/149‑1 (MQ=255)
                                                                                                                  gTTTACAATGAATTAACTAAATAAATTTAATAAAAAAATCATTCATTGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTCcac                              <  2:879806/149‑1 (MQ=255)
                                                                                                                  gTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTcac                              <  2:698444/149‑1 (MQ=255)
                                                                                                                  gTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTcac                              <  2:376203/149‑1 (MQ=255)
                                                                                                                  gTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTcac                              <  1:1564662/149‑1 (MQ=255)
                                                                                                                  gTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTcac                              <  1:1509370/149‑1 (MQ=255)
                                                                                                                    ttACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACat                            <  1:1472078/149‑1 (MQ=255)
                                                                                                                    ttACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACat                            <  1:1712463/149‑1 (MQ=255)
                                                                                                                    ttACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACat                            <  2:519183/149‑1 (MQ=255)
                                                                                                                     tACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACata                           <  2:1512809/149‑1 (MQ=255)
                                                                                                                       cAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACatata                         <  1:1146477/149‑1 (MQ=255)
                                                                                                                        aaTGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCTGATGTTACatatat                        <  2:1487454/149‑1 (MQ=255)
                                                                                                                          tGAATTAACTAAATAAATTGTATAAACAAATCATTCATGGTGAGCGCTTCATGAATGATTTTTTTAATTGATTCAACACCCTGCATCAACAAATACAAATGTCCAACTGTCCCCATTATCTTAACAGTTGTTCTTTTTCACAGATAttt                      <  2:667182/149‑1 (MQ=255)
                                                                                                                          tGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACTAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACatttattt                      <  2:1266642/149‑1 (MQ=255)
                                                                                                                                   aaaataaatTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACaaaa             <  2:660881/148‑1 (MQ=255)
                                                                                                                                         aatTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACAAAAGAtgtg       <  1:186636/149‑1 (MQ=255)
                                                                                                                                         aatTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATGGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACAAAAGAtgtg       <  1:183974/149‑1 (MQ=255)
                                                                                                                                         aatTGTATAAAAAAATCATTAATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACAAAAGAtgtg       >  1:1216633/1‑149 (MQ=255)
                                                                                                                                          atTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATTTATTTATAACAAAATTTGTGc      <  2:1009562/149‑1 (MQ=255)
                                                                                                                                          atTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACAAAAGATGTGc      >  2:1574485/1‑149 (MQ=255)
                                                                                                                                          atTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGATCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACAAAAGATGTGc      >  2:947919/1‑149 (MQ=255)
                                                                                                                                          aatGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACAAAAGATGTGc      <  2:1551145/147‑1 (MQ=255)
                                                                                                                                            tGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACAAAAGATGTGCCa    <  1:1671052/149‑1 (MQ=255)
                                                                                                                                             gTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACAAAAGATGTGCCAt   <  1:1371571/149‑1 (MQ=255)
                                                                                                                                             gTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAAGTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTCTCACATATATTTATAACAAAAGATGTGCCAt   <  1:1115094/149‑1 (MQ=255)
                                                                                                                                              tataAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACAAAAGATGTGCCATc  <  1:560827/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                  
AAATTAGACAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGGTGAGGGCTTCATGAATGATTTTTTTAATTGATTCAACACCCAGCATAAACAAATACAAAAGGACAACTGTTCCCATAATTTTAACAGTTGTCCTTTTTCACATATATTTATAACAAAAGATGTGCCATC  >  CP000730/2305997‑2306287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.