New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 514638	9 (0.070)	10 (0.080) +CCTGTAGGAG	7/274	7.7	54.4%	intergenic (+306/‑68)	rrs1/rrl1	16S ribosomal RNA/23S ribosomal RNA
	?	CP000730	514695 =	NA (NA)					intergenic (+363/‑11)	rrs1/rrl1	16S ribosomal RNA/23S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

AAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGATATGCTT  >  CP000730/514492‑514781                                                                                                                                                   |                                                                                                                                                aaaTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATACTCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTa                                                                                                                                                <  2:822653/148‑1 (MQ=11) aaaTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTa                                                                                                                                                <  1:672073/148‑1 (MQ=11) aaaTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTa                                                                                                                                                <  2:391944/148‑1 (MQ=11)  aaTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTaa                                                                                                                                               >  2:1203892/1‑148 (MQ=31)                                                                      gatttctAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACAAAGATTa                                                                           >  2:172660/7‑148 (MQ=0)                                                                                             ctacgAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAAAGGTGGAAACATAGATTAAGTTATTAAGAGCGCACGGTGGa                                                    >  2:711413/5‑148 (MQ=0)                                                                                                      aagcgcgAGTGTTAGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTGTTATAAAAGAACGTAACTTCAGGATAGCTTGTGACTGATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGc                                           <  2:697040/145‑1 (MQ=1)                                                                                                                                     atcaataaCCCGTTTAAATCTTTTTATAAAAGTAAGTGATTTCACGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAacga            <  1:605210/145‑1 (MQ=1)                                                                                                                                               cggttAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGATATGCtt  <  1:695383/145‑1 (MQ=1)                                                                                                                                                   |                                                                                                                                                AAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGATATGCTT  >  CP000730/514492‑514781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.