New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 5146389 (0.070)10 (0.080)
+CCTGTAGGAG		 7/274 7.7 54.4% intergenic (+306/‑68) rrs1/rrl1 16S ribosomal RNA/23S ribosomal RNA
?CP000730 514695 = NA (NA)intergenic (+363/‑11) rrs1/rrl1 16S ribosomal RNA/23S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

GAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGATATGCTTTGGGGAGCTGTAAGTAAGCTTTGAT  >  CP000730/514561‑514806
                                                                                                                                      |                                                                                                               
gatttctAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACAAAGATTa                                                                                                    >  2:172660/7‑148 (MQ=0)
                       ctacgAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAAAGGTGGAAACATAGATTAAGTTATTAAGAGCGCACGGTGGa                                                                             >  2:711413/5‑148 (MQ=0)
                                aagcgcgAGTGTTAGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTGTTATAAAAGAACGTAACTTCAGGATAGCTTGTGACTGATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGc                                                                    <  2:697040/145‑1 (MQ=1)
                                                               atcaataaCCCGTTTAAATCTTTTTATAAAAGTAAGTGATTTCACGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAacga                                     <  1:605210/145‑1 (MQ=1)
                                                                         cggttAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGATATGCtt                           <  1:695383/145‑1 (MQ=1)
                                                                                                  gtcaCTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGATATGCTTTGGGGAGCTGTAAGTAAGCTTTGAt  <  1:570843/145‑1 (MQ=1)
                                                                                                                                      |                                                                                                               
GAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTAAATCTTTTTATAAAAGAACGTAACTTCATGTTAACGTTTGACTTATAAAAATGGTGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGATATGCTTTGGGGAGCTGTAAGTAAGCTTTGAT  >  CP000730/514561‑514806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.