New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 34173 =74 (1.250)9 (0.160) 5/248 NT 12.0% coding (462/480 nt) orfX hypothetical protein OrfX
?CP000730 = 57858 62 (1.100)intergenic (+304/+613) USA300HOU_0048/USA300HOU_0049 hypothetical membrane protein/hypothetical protein

GGCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATTTTTGA  >  CP000730/34033‑34312
                                                                                                                                             |                                                                                                                                           
ggCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgagga                                                                                                                                             <  1:491910/141‑1 (MQ=255)
ggCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGAGTACAGAGCATTTAAGATTATGCgagga                                                                                                                                             >  1:220151/1‑141 (MQ=255)
  cGGATCAAACCGCCCGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGgaga                                                                                                                                           <  2:568632/141‑1 (MQ=255)
  aacttattattgttaaggaggatattttttagtgtgtaaattaaaaagaattttagaagaataacatttatcaaaaaactgttcattaccttattaattgaaattatataattaaaaaccgcatcattaaccgatacgcAg                                                                                                                                            >  1:287073‑M1/140‑141 (MQ=255)
  aacttattattgttaaggaggatattttttagtgtgtaaattaaaaagaattttagaagaataacatttatcaaaaaactgttcattaccttattaattgaaattatataattaaaaaccgcatcattaaccgatacgcAg                                                                                                                                            >  2:499714‑M1/140‑141 (MQ=255)
       cAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCat                                                                                                                                      >  1:557926/1‑141 (MQ=255)
       cAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACAACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTCATTGAAGAAGTGTACAGAGCATTTAAGATTATGCGAGGAAAAGCat                                                                                                                                      >  1:271974/1‑141 (MQ=255)
        aaaCGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAACTGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATTCGAGGAGAAGCata                                                                                                                                     <  1:372783/141‑1 (MQ=255)
         aaCGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGGGAGGAGAAGCatat                                                                                                                                    >  1:100646/1‑141 (MQ=255)
          aCGGCCTGCACAAGGACGTCTTACAGCGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATc                                                                                                                                   >  1:350176/1‑141 (MQ=255)
          aCGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCTCTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCatata                                                                                                                                   >  2:452405/1‑140 (MQ=255)
          aCGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATc                                                                                                                                   >  1:526515/1‑141 (MQ=255)
           ttgttaaggatgttattttttagtgtttaaattaaaaagaattttagaagaataacatttatcaaaaaactgttcattaccttattaattgaaattatataattaaaaaccgcatcatttaccgatacgcAGAAGCATATc                                                                                                                                   >  2:476795‑M1/131‑141 (MQ=255)
           ttgttaaggaggatattttttagtgtgtaaattaaaaagaattttagaagaataacatttatcaaaaaactgttcattaccttattaattgaaattatataattaaaaaccgcatcattaaccgatacgcAGAAGCATATc                                                                                                                                   >  1:6128‑M1/131‑141 (MQ=255)
               cTGCACAAGGTAGTCTTAGCACGCAGTAACTCCGCACTATCAGTCAGCAAAAGTACATGCCCACATCCAGTTATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATGATaaa                                                                                                                              <  2:477806/141‑1 (MQ=255)
                  cacaAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGCGGAGAAGCATATCATAAatga                                                                                                                           >  2:128083/1‑141 (MQ=255)
                    gaagacgtgtctactttgtaagcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAatgat                                                                                                                          <  1:281766‑M1/20‑1 (MQ=255)
                       ggACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCgg                                                                                                                      >  2:218566/1‑141 (MQ=255)
                            tCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGttttt                                                                                                                 >  1:129092/1‑141 (MQ=255)
                              ctACAACGAAGTACCTACGCACTTTCACCCAGCAAAATGACACTATTTTCAGCGAGTATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTc                                                                                                               <  1:157788/140‑1 (MQ=255)
                               taaaaCGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCAACAGCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGACAAGCGTATCATAAATGATGCGGTTTTTTCa                                                                                                              >  2:229198/4‑141 (MQ=255)
                                 ctttgtaagcttctaagaacttagtatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAg                                                                                                             >  2:162799‑M1/109‑141 (MQ=255)
                                      cAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCtt                                                                                                       >  1:322785/1‑141 (MQ=255)
                                      cAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCtt                                                                                                       >  2:462345/1‑141 (MQ=255)
                                        gTAACCACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGATCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCa                                                                                                     <  1:565555/141‑1 (MQ=255)
                                         tAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCAt                                                                                                    >  1:139852/1‑141 (MQ=255)
                                         tAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCAt                                                                                                    >  2:530033/1‑141 (MQ=255)
                                             tACGCACTATCATTCAGCAAAAGGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAg                                                                                                <  2:5323/141‑1 (MQ=255)
                                              aCGCACTATCATTCAGCAAGATTACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAgg                                                                                               <  1:37674/141‑1 (MQ=255)
                                              aCGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGGTTTTTCAGCCGCTTCATAAAgg                                                                                               >  1:599101/1‑141 (MQ=255)
                                               cGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAggg                                                                                              <  1:3906/141‑1 (MQ=255)
                                                agaattttagaagaataacatttatcaaaaaactgttcattaccttattaattgaaattatataattaaaaaccgcatcattaaccgatacgcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAggg                                                                                              >  2:413873‑M1/94‑141 (MQ=255)
                                                 cACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGAt                                                                                            >  2:72978/1‑141 (MQ=255)
                                                   cTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGAttt                                                                                          <  1:86259/141‑1 (MQ=255)
                                                   cTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGAttt                                                                                          <  1:109776/141‑1 (MQ=255)
                                                    tATCATTCAGCAAAATGACATTCCCACAGCAAATGGGGCGGGTTGTGTTAATTGACCAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGAtttt                                                                                         >  1:538172/1‑141 (MQ=255)
                                                      tCATTCAGCAAAATGACATTCCCACATCAAATGCGGCGGGTGGTGTTAATTGAACAAGTTTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGAAtttcaa                                                                                       >  1:98880/1‑138 (MQ=255)
                                                        cttCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGACGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAAt                                                                                     <  2:595040/140‑1 (MQ=255)
                                                        aTTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAAt                                                                                     <  2:640423/141‑1 (MQ=255)
                                                        aTTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAAt                                                                                     <  2:139852/141‑1 (MQ=255)
                                                         ttCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCAGAAAGGGATTTTGAATg                                                                                    <  1:357440/141‑1 (MQ=255)
                                                         ttCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTGCAGACGCTTCATAAAGGGATTTTGAATg                                                                                    <  1:442186/141‑1 (MQ=255)
                                                         gtCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATg                                                                                    <  2:585977/140‑1 (MQ=255)
                                                          tCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGt                                                                                   <  2:386617/141‑1 (MQ=255)
                                                          tCAGCAAAATGACATTCCCACATCAAATGATGCGGGCTGTGTTAAGTGAACAAGTGGACAGAGCATTTAAGATTCTCCGAGAAGAAGCATACCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGt                                                                                   <  2:276/141‑1 (MQ=255)
                                                           cAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTa                                                                                  <  1:580889/141‑1 (MQ=255)
                                                                tatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAg                                                                              >  1:356618‑M1/78‑141 (MQ=255)
                                                                aatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAg                                                                              >  1:79998‑M1/78‑141 (MQ=255)
                                                                 aaTGACATTCCCACATCAAATGATGCGGGTCGTGCTAATTGAACAAGCGGACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTATTTTCAGCCGCTTGATCAAGGGGttttcgatacatcccaa                                                                            >  2:98514/1‑128 (MQ=255)
                                                                   agACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACa                                                                          <  2:250362/140‑1 (MQ=255)
                                                                   agACATTCCCAAATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTAACGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACa                                                                          <  2:74647/140‑1 (MQ=255)
                                                                    gACATTCCCACATCCAATGATGCGGGTTGTGTTAATAAAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACat                                                                         <  1:41789/141‑1 (MQ=255)
                                                                    gACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGGGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTAGCAAAACat                                                                         >  1:532770/1‑141 (MQ=255)
                                                                    gACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACat                                                                         <  2:485555/141‑1 (MQ=255)
                                                                     aCATTCCCACAACAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACata                                                                        <  2:324447/141‑1 (MQ=255)
                                                                         ttCCCACCGCAAATGATGCGGGTTGTGTGAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                     <  2:590888/141‑1 (MQ=255)
                                                                         ttCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                     <  2:609851/141‑1 (MQ=255)
                                                                           cccACATCAAATGATGCGGGATGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAgg                                                                   >  1:687792/1‑141 (MQ=255)
                                                                            aaaactgttcattaccttattaattgaaattatataattaaaaaccgcatcattaaccgatacgcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGt                                                                  <  2:356490‑M1/76‑1 (MQ=255)
                                                                             cacaTCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGtt                                                                 <  2:538172/141‑1 (MQ=255)
                                                                                aTCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAt                                                              <  2:369749/141‑1 (MQ=255)
                                                                                  catttgatgTGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGAGGCGGTTTTTTCAGCCGCTTCATAAAGGGAGTTTGAAGGTATCAGAACATATGAGGTTTTtgg                                                            >  1:663013/5‑140 (MQ=38)
                                                                                   tgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtgtg                                                           >  2:269236‑M1/59‑141 (MQ=255)
                                                                                   tgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtgtg                                                           >  1:94472‑M1/59‑141 (MQ=255)
                                                                                   tgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtgtg                                                           >  1:494811‑M1/59‑141 (MQ=255)
                                                                                    aaTGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGa                                                          <  2:490732/141‑1 (MQ=255)
                                                                                     atgatgCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGaa                                                         >  1:81001/1‑141 (MQ=255)
                                                                                              gTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGGGGAGACGCATATCATCAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATGTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTATTa                                                >  1:636023/1‑141 (MQ=38)
                                                                                                tgtgTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATACAGGGATTTTGAATGTATCGGAACATATGAGGTTTATGTGACTTGATGTTATg                                              >  1:568798/1‑141 (MQ=255)
                                                                                                tgtgTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATg                                              >  1:93777/1‑141 (MQ=255)
                                                                                                tgtgTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATg                                              >  1:380683/1‑141 (MQ=255)
                                                                                                 gtgtTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGACGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGt                                             <  1:468279/141‑1 (MQ=255)
                                                                                                  ggtTAATTGAACAAGTGTAAAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGtt                                            <  2:609712/140‑1 (MQ=255)
                                                                                                  cgtTAATTGAACAAGTGAACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCATAAAAAAGGGATTTTAAATTTACCAGAACATATGAGGTTTATGTGAATTGctgttctgtt                                            <  2:422918/140‑1 (MQ=38)
                                                                                                   gtTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAACGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGttt                                           <  1:462345/141‑1 (MQ=255)
                                                                                                   gtTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGttt                                           <  2:322785/141‑1 (MQ=255)
                                                                                                    ttAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGtttt                                          <  1:650643/141‑1 (MQ=255)
                                                                                                     tAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGttttt                                         <  2:129092/141‑1 (MQ=255)
                                                                                                     tAATTGAACAAGTGTACAGAGCATTTAAAATTATGCGAGGAGAAGAATATCATAAATACTGCGGTTTTTTAAGCGGGTTCATCAGTGGGTTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGgtttt                                         >  2:174451/1‑141 (MQ=37)
                                                                                                             cAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCACATCTTAAATGATGCGGTTTTTTCAGCCGCATTTTAAATGGATTTTTTTTGTATCATAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCt                                 <  1:334571/141‑1 (MQ=255)
                                                                                                               aattaaaaaccgcatcattaaccgatacgcAGAAGCATATCATAAATGATGAGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATGGCTGTTATGTTTTTAAGAAGCTTa                               <  2:43339‑M1/111‑1 (MQ=255)
                                                                                                                   tACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTCTAAGCGTACATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCAt                           >  1:502065/1‑141 (MQ=38)
                                                                                                                   tACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCCGCGCCAGTAAGTATTGTGTGAATTGCTGTTATGTGTTTAAGAAGCTTATCAt                           >  1:157997/1‑141 (MQ=255)
                                                                                                                   tACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGATTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCAGTTATGTTTTTAAGAAGCTTATCaa                           >  2:556051/1‑140 (MQ=255)
                                                                                                                   gaaaggacATTTGAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCAt                           <  2:190351/134‑1 (MQ=255)
                                                                                                                     aaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATaa                         <  2:534022‑M1/117‑1 (MQ=255)
                                                                                                                       gagCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGt                       <  1:14652/141‑1 (MQ=255)
                                                                                                                       gagCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGt                       >  1:231119/1‑141 (MQ=255)
                                                                                                                       gagCATTTAAGATTATGCGAGGAGAAGCATACCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGt                       <  2:33363/141‑1 (MQ=255)
                                                                                                                              tAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAgg                >  2:646254/1‑141 (MQ=255)
                                                                                                                                 gATAATGTGAGGAGAAGCATATCATAAATGATGCGGTTTTATCGGACGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTc             <  2:663013/141‑1 (MQ=37)
                                                                                                                                      tGCGAGGAGAAGCATATCATAAATGATGCGATCTTTTCAGCCTCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAt        <  1:128083/141‑1 (MQ=255)
                                                                                                                                        ggaggagAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAttt      <  1:533283/140‑1 (MQ=255)
                                                                                                                                        cGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTTGTAAAGGGATTTTGAATGTATCAGCACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAGAGAGATTATCATAAGTAATGAGGGTTGTGAttt      >  1:75095/1‑141 (MQ=25)
                                                                                                                                        cGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAttt      >  1:101601/1‑141 (MQ=255)
                                                                                                                                          aggagAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAGCATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAttttt    >  1:644233/1‑141 (MQ=255)
                                                                                                                                          aggagAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGTGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAAAGAGGTTCATGAtattt    >  1:186689/1‑141 (MQ=255)
                                                                                                                                          aggagAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAttttt    >  1:539983/1‑141 (MQ=255)
                                                                                                                                            cAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATTTTTGa  <  2:148793‑M1/140‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                           
GGCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATTTTTGA  >  CP000730/34033‑34312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.